Array 1 107100-106276 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGN01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033865 CFSAN033865_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107099 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107038 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106977 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 106916 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 106855 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106793 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106732 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 106671 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 106610 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106549 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106488 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106427 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106366 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106305 29 96.6 0 A............................ | A [106278] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125092-123233 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGN01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033865 CFSAN033865_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125091 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125030 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 124969 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 124908 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 124847 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 124786 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 124725 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124664 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124603 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124542 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124481 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124420 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124359 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124298 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124237 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124176 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124115 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124054 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 123993 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 123932 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 123871 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 123810 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 123748 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 123687 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 123626 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123565 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123504 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123443 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123382 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123321 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123260 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //