Array 1 44983-46475 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIZ01000004.1 Salmonella enterica strain BCW_5841 NODE_4_length_224757_cov_3.29613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44983 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45044 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45105 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45166 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 45227 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 45288 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45349 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45410 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45471 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45532 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45593 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45654 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45715 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 45776 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 45837 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 45898 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 45960 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46021 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46082 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46143 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46204 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46265 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46326 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46387 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46448 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62607-64510 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIZ01000004.1 Salmonella enterica strain BCW_5841 NODE_4_length_224757_cov_3.29613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62607 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 62668 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62729 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 62790 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 62851 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 62912 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 62973 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 63035 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 63096 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 63157 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 63218 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63279 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63340 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63401 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63462 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63523 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63584 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63645 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63706 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63767 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63829 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63932 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63993 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64054 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64115 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 64176 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 64237 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64298 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64359 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64420 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64481 29 96.6 0 A............................ | A [64507] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //