Array 1 3890159-3887092 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHFG010000001.1 Pontiella desulfatans strain F1(T), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 3890158 31 100.0 35 ............................... ATTTTGCGGCAACATGCCCTTGTATACCACCGTGT 3890092 31 100.0 35 ............................... AGGGATCAGGCTCCGACTTCGACGGTGAAGAAGGT 3890026 31 100.0 36 ............................... ATGTCGACCGCGTTGGTGGCCGTGAGGTTGTTATGT 3889959 31 100.0 36 ............................... ATCCGCCGGCCCTCCTTGGCCAGCGCCGCCGCCGGT 3889892 31 100.0 36 ............................... TCATACTTCATCAGGCCAGCGCAGGATGATATAAGT 3889825 31 100.0 35 ............................... TTGGGCTGCTTGAGGATGCCCCAGTCGAAGTAGGT 3889759 31 100.0 36 ............................... CTGGAGATCGACGATGTCCCGTTCGTTGCGCCGGGT 3889692 31 100.0 34 ............................... TGGCAGCTGGCGGTTGAATATGTGGCCGGCTCGT 3889627 31 100.0 35 ............................... GTTTCTGGCAACCTCGAAAGCAACGTCGATGTGGT 3889561 31 100.0 35 ............................... CAGCGTGGCGCTGAACACCCAGAAAGCCATGTTGT 3889495 31 100.0 35 ............................... CGGCAATGGGGGTGAACGTTACGCATGAGCTTCGT 3889429 31 100.0 35 ............................... TTGCGCTCAAGGCCTGCCGCTATGTGGCATGGGGT 3889363 31 100.0 34 ............................... AGCCGATCGATGCACCGCGGCAACCCCGTCCCGT 3889298 31 100.0 34 ............................... TGCCACCGCCGGCGCGTCTTCGGGTGCGCGTTGT 3889233 31 100.0 35 ............................... ATCGGCACAACGTTGCCGAGTGCGACCTGCTCCGT 3889167 31 100.0 35 ............................... GCTGATTGCCTCGGCGGCCTATTGGATTTCGGCGT 3889101 31 100.0 34 ............................... CGATGGATGGCGAGGTCGTATTCGATAAAAAAGT 3889036 31 100.0 35 ............................... CCATGGCGGCATTTTCCGCCGACCTCTCGCCGGGT 3888970 31 100.0 35 ............................... ATCCCCTGCCATGTGCAATTGCTGCCCGCCGGAGT 3888904 31 100.0 35 ............................... AACCCTCGCCCTTTGTCCAACCCATCACTACACGT 3888838 31 100.0 35 ............................... CGCTGCGGCAGATACCTCGACCACGGCGGTCAGGT 3888772 31 100.0 36 ............................... TGGATAGTCGTCGGCCAGTTCGGCCATTTTTTCCGT 3888705 31 100.0 35 ............................... ATTTCCTGATCCGCATTGATGGCGGCAATCTGCGT 3888639 31 100.0 35 ............................... AGGAATAGATGGCGCCTGGTCTTCAAAGTCGGCGT 3888573 31 100.0 35 ............................... AAGCTGCGAGGGATCCGGATTATAGAGCGACTCGT 3888507 31 100.0 35 ............................... TCAAAGCTCTCCGCAATCACGCGCGGCACGTAAGT 3888441 31 100.0 35 ............................... GAGTAAAAGGATTACTCGAACACATATCGCAACGT 3888375 31 100.0 34 ............................... CTTTCCGGGGGCGAACCATTCGCCCCCAAATCGT 3888310 31 100.0 35 ............................... CTCCTGGGTCCACTCGCAGAGTGTCATCAAATCGT 3888244 31 100.0 34 ............................... GTGCTGCCAGAATGGGCAATAGTGACAATCCAGT 3888179 31 100.0 35 ............................... GCTAGTAAGAGTTATCGACGCGGATACCGTCGTGT 3888113 31 100.0 35 ............................... ATCATAAACTTTGCAGGGTGCGGTCATCGTTACGT 3888047 31 100.0 35 ............................... TTTTGGCCTGCCAGAATTGCGGCCACCATCAATGT 3887981 31 100.0 35 ............................... CCGCGTGAGCGGATTTTTTACTCGACATTGCAGGT 3887915 31 100.0 35 ............................... ACATCCACATGCACGTCATCCTTGATTGCCCATGT 3887849 31 100.0 34 ............................... CTGGGTGCCCAACAAAGGCGCCGCCATGGAAGGT 3887784 31 100.0 35 ............................... ACCGAGGCCGGCCAATTTCCGCAGGCGAACAACGT 3887718 31 100.0 35 ............................... GAGCTCTCCGTCTCCCCCGGCGCGAACCCCAAGGT 3887652 31 100.0 35 ............................... GCGTGCGTTGCCGTCCTCTGGCCGTACGCCGACGT 3887586 31 100.0 36 ............................... ACATCCGCCAAATAATGCTCATGACCCGTCGCCCGT 3887519 31 100.0 36 ............................... AAGGAAATTCCCCTCCGCCGGGATGGCGAGCTGAGT 3887452 31 100.0 34 ............................... GTTTCAACAATTTCGAGACAGCCGGCTTTGAGGT 3887387 31 100.0 34 ............................... TTCCCACTGCAATTCTTGCCACGAACGCGGCGGT 3887322 31 100.0 36 ............................... ATCTATTCTCCCGGCACCGGATAACGGTCGTTTTGT 3887255 31 100.0 36 ............................... CGGATATTCAAGCCCTGTGTCGAAAAAGACGAGGGT 3887188 31 100.0 35 ............................... CTGAACCAGCCCGTAATCTCAAACTTGGCGGGTGT 3887122 31 96.8 0 .............................G. | ========== ====== ====== ====== =============================== ==================================== ================== 47 31 99.9 35 CGCGCCCCACACGGGGCGCGCGGATTGAAAC # Left flank : ACGTATCCACCATCAACAAACCCGGGCAGCGACGCCTGGTCCGCATCGCAAAGACCTGCCTGAACTACGGACAGCGCGTCCAGAACTCCGTCTTCGAATGCCTCGTCGACCCCGCCCAATGGACGACCCTCCGCGCCGAGCTCCTCCGCCTCTACAAGCCCGAAGAAGATTCCCTTCGTTTCTACTTCCTCGGTGCCAACTGGGAATCCAAGGTCGAGCACCACGGCACAAAAGACACCCCCAATCTCGAAACCGGGACACTGATTGTGTAGCGACGCCGCAGCGCGGGCGCGGCAACGTATCGCAGGGATTCAACCTGCTCCGCGAACCTCCAGCCCCCGTCCAGCTCCCGGCAGGTTCGCGCCCGACGCAAACACCGCCCAGCACGCGGCTTGCAAGGGCCGACGTTCTTTGAAAACTGAATAGCACGCAAACACCCGAGAGGTTCGCGCAAAAGAAAGCATCGACTCCCTCCGCGCAACGGTTTACAAAACCACCGT # Right flank : CGGCAGGTAGGTCAGCGAGGCCGATGTCCCTCCAGAGGGGGGCGGGGGGCGGCTATTTTTTTGTCATGAATTTCATGAGGAAGCCCATGAGGATGAGGAGGATGATGGCGCCGATGGTGGACATGGCGAGGAGGCCGAGGTGGGGGTTGGCGAAGCGGATGCCGAGGGTTTGGAAGAGGGCGGTCCCGATGTAGGCGCCGATGACGCCGATGATGATGTTGCCGAAAATGTTGAAGCCGCCTTTTCTGACAATCAGGCTTGCGAGCCAACCGGCGATTGCTCCGGTTGCAATGAGGATGACGAGTTCCTGGATTTCCATGGGGTGCTCCTTTTGCTGTTCCACGAGGCCATGAAAATATGACGGTGCGTGGGCTTAGGCAATCTTTGCTTACGCGAATCCGGCGTTCCGGTGGGGAGGCAAAAGCTTGATGTGCGCTTGATGCGCCGTTCCCGGGGGTGTATTAATTGTCGCTTTTGAAGGGGAAACGATATGGATATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCACACGGGGCGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3923661-3923163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHFG010000001.1 Pontiella desulfatans strain F1(T), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3923660 36 100.0 30 .................................... CCAGACGATCTACATCTTAGGTGGTGGCCC 3923594 36 100.0 30 .................................... AGTAACAAGCATGTCGCCGGTACCGGCAGC 3923528 36 100.0 30 .................................... TTCTTGACCAGACGGGGCCGGCGGAGGTGA 3923462 36 100.0 30 .................................... CTGATTGCGAACAACAAGAGGCCCCCGGCT 3923396 36 100.0 30 .................................... ATCATGCTCCTTGCATGCTGCAGGACCTGT 3923330 36 100.0 30 .................................... CGTTGTCTGGTTTTCTGGCTCATGATTCGA 3923264 36 100.0 30 .................................... AGTTTAAGAAATCAAGATTACCCAAGTCAT 3923198 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTGGATTGACAGTTCTTTGAAATCAGAAGCAAC # Left flank : GATTATCCCGTAATGAAGGCGGTAGAAAATGTCGGAGGTGCGGCTTAACGCGTATAAGATCATGTGGCTGTTTGTATTCTTCGACCTGCCGACGAACACGAAAAAGGAGCGTCACGACGCTGCTGTGTTCCGCAAGCGGTTGTTGGGCGACGGCTTCACCATGATGCAGTACTCTGTTTATACTCGGCACTGCGGAAGTTCAGAGAGTGCCGACGTGCATACGAAGCGGGTCAAAGGACTCGTTCCCTCCAAAGGGCAAGTCAGTATTATGCGGATCACGGACAAGCAATACGGCAACATTATTAATTTCTGGGGGAAGGCGGCTATCCAGGTTCCTCCGAAACCCAGCCAGTTGGAGTTTTTCTGACTGGTGCTAAATGAAACGAACGATAGAATGCAGAATATGAACTGTAAATTTACTTCATGGTTAGAACCGTGCCGGTTTTCTTTAGCGCTGGCAGATGCTAGTTCCTTGGAAAACAGCGGCTTATGGCGGCTAT # Right flank : GGCTTTGCAATGGAAAGTGTATGGAAACTTACGTGTCATGAATGCGGGGTATTTCTGTTGCTAGTAAAACCATAATGATATAAGGAATATGCTCTTGTGAGCGGAGAGCCTGATCATGAGAAGCGTTGTTGCCTGTGTCGTCATCATTTTAGGCGCCATGTCTTATCACCGAATCGTGGATTTGCTGAGCAACCCCCGCTCCCTAATGCAGCGCACGTATGAGATGACACTCTAATTTTTGAAGGACAGAACATATGATCAACAGCAGGCAATCCCGGCGACAGTTTTTCAATCATACTGCAGCGTCTTTCGTGGCTCTGCTATCCATTCCTCCATGTGCTACCGGCGAAGGTTCTTTAACTGCTTCCGAGGCGATGCCGCCGAGATGGAAAAACCGGCAGGAAGGGATGAGGTATCGCCGCCTTGGGAAGACCGCGATGATGGTGTCGGAGCTGGCGATGGGAACCTTTCCTTTCGAGTCCGAGGACAGCTTTCCATTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATTGACAGTTCTTTGAAATCAGAAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //