Array 1 62469-61116 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCP01000027.1 Moraxella catarrhalis strain 5012204D 5012204D_NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62468 28 100.0 32 ............................ TTTGACGGTTGCCAAAAAATTATTAAAACCAT 62408 28 100.0 32 ............................ GCCTGCTGCACCTGATAACACAATGATACTAT 62348 28 100.0 33 ............................ CATGAAAAAGATATTATTACTGACCAAGTTGAT 62287 28 100.0 32 ............................ CCGTAAAACCCAAAATTTGAAAGATTTCAGCA 62227 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 62167 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 62107 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 62046 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 61986 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 61925 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 61865 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 61805 28 100.0 32 ............................ ACAATACCGCAGAAGGCATTTCTTTTGATAAA 61745 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 61685 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 61625 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 61565 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 61505 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 61445 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 61385 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 61324 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 61264 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 61203 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 61143 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //