Array 1 209310-211523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUG010000004.1 Listeria monocytogenes strain SCPM-O-B-8697 4length=216901, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 209310 36 100.0 30 .................................... TTTGTCTAGCAGCAAACAATGCTCACATTG 209376 36 100.0 30 .................................... GTAGACTATGCAATATCCACTGTAGACACC 209442 36 100.0 30 .................................... GTGTCCAAAATGTGAACTTTCTTACGTTTG 209508 36 100.0 30 .................................... GGAAGCCATGCTTACGATTACCAACGCCAT 209574 36 100.0 30 .................................... CGTGGGTCTTTCGTGTCTAAACCTTTGTTT 209640 36 100.0 30 .................................... TGTTTATTGGATTAATGTGCTATGTGGTCA 209706 36 100.0 30 .................................... GGCAGATGAACTGTATATTAAATTTGGGGA 209772 36 100.0 30 .................................... CCTTTCTTCTAATAATCGCTCTCTTGCTTC 209838 36 100.0 30 .................................... ATGGACAAGTTTATAAAAATCTAAATGTAA 209904 36 100.0 30 .................................... TGGAACAATGGTAATGGTACACAAGGTATT 209970 36 100.0 30 .................................... TTCCCTAGTGTAGCCCTTGTTGGAAAGTCA 210036 36 100.0 30 .................................... TTACTTACAGTCAAGACCTAGCATTTATGG 210102 36 100.0 30 .................................... AGCAAATGAACTATATATCAGATTTGGAGA 210168 36 100.0 30 .................................... TAAGCCTTCTTGGGCAGATAAAGATGTAGC 210234 36 100.0 30 .................................... TCTTTTCATTATACTCTATTCCCCTTAATA 210300 36 100.0 30 .................................... AATTGTAGAGGATACGGCATTTAATCCACT 210366 36 100.0 30 .................................... AGATAAAAACAAGGACAAGTAAATTCAGAG 210432 36 100.0 30 .................................... AGCAAAAAGCATTACATTTGATGAAATTCC 210498 36 100.0 30 .................................... CTCCCGTCACCTTCTTCTAACTCCGCTATT 210564 36 100.0 30 .................................... AGTATTGCCATTAATAGCATCAAGTAAAGA 210630 36 100.0 30 .................................... AGCTTATAATTTCCATCAACAAAATATTAG 210696 36 100.0 30 .................................... CATTCTTCCGCAGAGAGTTCAACGTAACTT 210762 36 100.0 30 .................................... GCAACAATGCAATGAAACATTAAGAAATGG 210828 36 100.0 30 .................................... TTATTCGCTAATGTTGCAAGATGTGCAGCA 210894 36 100.0 30 .................................... ATTCGTTATTTTATTCGTTAATAATGGTGA 210960 36 100.0 30 .................................... GTTATTGTCAAAACACTTCCCGAATGCGTT 211026 36 100.0 30 .................................... TTTTGTTCGCGTCGTTCTGTCAGCCCGAAT 211092 36 100.0 30 .................................... TACATCTCCTTTTCAAATAATATTGTTAGT 211158 36 100.0 30 .................................... CAGTACTTGAGTCAGCCACCTTCCATATAA 211224 36 100.0 30 .................................... TTGCTGTACCCATTTTGGAATGCTTTTACC 211290 36 100.0 30 .................................... GTGCTGCTGTTAGAGAGTCATGTTCACGCA 211356 36 100.0 30 .................................... ATCCCATTTTTCAACATAATAGGTAGCAAC 211422 36 100.0 30 .................................... ATGCAACAAAGGAGTCTTGTATAGTTTGTT 211488 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CAGTGATGGGGAAGAGATTGAACTTATGTTTGTTTTAGAGCTATATTATTCTGAATATCAACACACAAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATATGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //