Array 1 1509949-1509589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBET010000001.1 Clostridium botulinum strain DFPST0027 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1509948 30 100.0 37 .............................. TACAAGACTATATTGATAAGCATTAAGGTATAATTTA 1509881 30 100.0 36 .............................. AGTTTATCTCATTTATTGATGCGGATTTGATGAAAT 1509815 30 93.3 36 ........G......A.............. TGAACTTATAATATATAATGTAATTAAAGGTTAAGA 1509749 30 100.0 35 .............................. TCTTTAGCGTCTTGATCTATACCTATATATTTAAG 1509684 30 96.7 36 ..................G........... CCAGTTAATTTATCTATAACCTTAAATACCATATAA 1509618 30 90.0 0 ...............AG............C | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTTTTTGCAGTAAACATTTATGATACGATTGTTTTAGATATAGGTCTTTTTTGTCATAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCGTGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTTATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTACTTCGAGAATGGGAGAAGTAGTTTCATTAATGAGTATAGTATATAGCTTATATATAATTGAAGTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTCTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGGAAACTTTTTCTAGAACCTTGTAAAATCAATGGTTGTATGATAATCTTAAAAATAAGGAATGGCTATTTTACTATGG # Right flank : AAATTAAAATCCATGATTTTTTCCCTTTAAATTTATTTAGTTTTTAGAGCAGCGTTGATAATATATCAATTTTTAAGAGAAGCCATTTTAGACTTCCCTTAAGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGACATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGAACTACTTTCATATGTCCAAATAGTTCCACTTCCACTTAATTTCAACTTCCCTTTATATATTCCAGATTCTATGATTTCATCACTTTTATCTAATCCAAAAGTATCATATA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1516880-1516585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBET010000001.1 Clostridium botulinum strain DFPST0027 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1516879 30 100.0 35 .............................. TCTAAATCTTTTGCACTTGCTAATTTACCTTTTTC 1516814 30 96.7 38 .................A............ TTAATATATTTACCAAGGTTTTATATTATCATACTTAA 1516746 30 100.0 36 .............................. ACTACTGCAGTAACGGAATGTGGTGGCAAACCTAAT 1516680 30 100.0 36 .............................. AAGGGTTCTCCACACTCTAGTTCTTTCATAAGTTCA 1516614 30 90.0 0 .......................C....GC | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 97.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTAAGCAGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGAGAAGAGGAGAAGGAGTTTCATTAAATAATAATTAGACACTTAGTATTTTAAGCTTAAGTATGATCTGAAAAGGTTGAACATTAACATGAGATGTATTTAAATTATTTACATTCTGTTATACCACAACATTTACAACATGTTGAACAATAACATAAGATGTATTTAAGCAGAGAACTCAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGACTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGATTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTTTTGCTTTATTACTTCTTGAGTTAAATTGTGGGATTTTATTGACTAAAATATTTTTAAAATATAGTTTTAATTTTGGTTGTGCTTTAAAGTAGTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTTTATATAAATTGTAAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTCCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCATTTGGTATAAGAGACAATAATATCACTGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTATTATAATTTTCTTCCCCTAAATTTTTATTTGTTTTATAGTTAACGGTTATTTCATAGGGCTCTTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1531523-1531683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBET010000001.1 Clostridium botulinum strain DFPST0027 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 1531523 33 100.0 32 ................................. GGTTACTGGCTTTCTAATACATATAATTAAAT 1531588 33 97.0 30 ..G.............................. CTATATAAAAGCCATTGGGAATTTTGTTTA 1531651 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================ ================== 3 33 99.0 32 TACATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : GCAAGTTTCTATTTTATCTATAAATTCTTTACTCAATCCCCTAATATTAAAAATATATAATCTATCCTTTTTATAAAATTTGTCTCTTTCTATAGGATAAAAACTATTAAATACGTAATTTTTGTACTGTTTCTTTGGATGTATTTCCTTTAAATCTTTATCCAAAAGCATACTTTTATTTATGTTTTTCCCTATTATATATCCACAATCTTCAAAATATATATCTTTTTTTAACATCACTGTTGCAATCAGTTCACAAAATTCCATTTATGCACCTCTTTATACAAATTTATCTATATTATACCATATAGCCTTTAGTTAATATAACCGATTATTCTACTTTTATTTTAAAAATATTATTATCTTTATTAATGATAAGTTACTTACCTATCATATTCTATTCTAAATCTTTGCATAAAATAAAAGCCTTAGATTTTTCTAGGACTTTTAATGATTCTTATTATTCAACATATGGCTAATACTTTAGAAAATGTATTAAA # Right flank : CCATAGTAAAATAGCCATTACTTATTTTTAAGAATAGCATATAGCCATTGATTTTACAAGGTTTTAAAGAAAATTTTCCAACCAATTATGATATTTTATAAATATATAAGGGAAACCTACCTTAAGCCTTACATTTCAAAAGCTAAGATAGGCTTATAAGTTAAAATTGGCTGGAAAAATATTAGCGTATTCTATATAATTATTTGTTATTTTTATCCTAAAATAAACGTAATATTCTAAATGGAAATATGATTTACCATTTAATCCCTCTGTTTTTAATATAGATAATTATGATATAATATCCAAGTTAGGATAGTAATTCCGTAGTGGATGGCTACGGGGGTTTTGAATATTTTATCCTCCTAGGATATTGGTGAGTCTTTCACTTATAAATAGGAGGTGGTATTGGATATGCTAGAATTAACCATAAAAAGTTTTGTTGTAATTTATATTGTTAAATTAATTTTAAAACATAATCTTTTTATTTCCAAACTAGTTAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 1532817-1532589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBET010000001.1 Clostridium botulinum strain DFPST0027 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1532816 29 100.0 37 ............................. CATATTTTGTTCTACTTCTGAAACTGTTATAGGGTCG 1532750 29 100.0 38 ............................. CTTGTTATGTTTTCCTTTTTCATATAAAATCACCTCTA 1532683 29 100.0 37 ............................. TTCTTCCAAGAATTTATATTCATCTGAATACTCTATT 1532617 29 89.7 0 ...............T.A.......G... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 38 ATTGAACATTAACATGAGATGTATTTAAA # Left flank : AATCGGATTTGCATTTAAAGAAGTAAAAGCTGGAGAAGAAAAAAGATTTGAGATAGTAATAACCTATAATAAAAAAATGTATATTTTAGAACTTAAAATATGGAGAGGTGAAGAGTATCATAAAAAAGGCTTAATACAGCTAGCAGAATATTTAGAGCAATATAAATTAGATAAAGGGTACCTTTTAATATTTGATCTAAGAAAATCCACAAATTTAATAGGAGAAGTAGAAGAAAACTATATAGGTATAGAAAATCATAGTAAAAAAATAATACAGGTTTATTGTTAAAAAGTATATAGCAGTTAAAAATTATTTCTAAATATTTTTCCAAGTGAATTAAAAATCTAAACCTATCCTAGCCATTGGAATATAAGGCTTAGGATAGGTTTTTATTATGAAATTTTAAAAAACAAAATCGATTGGAAAACGTTCTATAAAACCTTGTAAAATCAGTGCTTATATGATATTCTTGAAATTAAGGAATGGCTATTTTACTGTG # Right flank : AAAACAAATAACGATGAAAGGATAACAAATAATAATTAAGGTAGCTTTTCATTGACAAGGTTTTTCAGCATTTTGAAATTGAAAAATCAATAGCAAATATTATACAGAGAGGGAATCAATTGTAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTAGATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAATATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTGAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //