Array 1 36711-34363 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBV010000013.1 Salmonella enterica isolate 2214_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36710 29 96.6 32 .........................G... GGCGCTACAGTCTGAATGATCTCCACGCCTCC 36649 29 96.6 32 .........................G... TTTCCTGTAACATTCCGATATATAATTCTCCG 36588 29 96.6 32 .........................G... ATGACGACCTGATTTCAATTGACGCGCTGACT 36527 29 96.6 32 .........................G... TCGCGTGAGGACATTGCCCCTGACACCGGGCG 36466 29 96.6 32 .........................G... GGATCTACGGCTTTAAAATCGTGTTTGCCTCG 36405 29 96.6 32 .........................G... GCGATCTGCTGGTGCTGGGGGGTAATCAGTCC 36344 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 36283 29 100.0 32 ............................. GGGAACAACACATCACCCCTCACCGAGGGCGG 36222 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 36161 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 36100 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 36039 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 35978 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 35917 29 100.0 32 ............................. GAGCACTCAGAAATTTGGCAACTGGACGCTGA 35856 29 100.0 32 ............................. GCTGAGGGTTCGGACGGCATAGGAATAGAGCA 35795 29 100.0 32 ............................. ACTCCAGCCCCACACGCGCTGGCCGCGCTAGT 35734 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 35673 29 100.0 32 ............................. TTGGTGCCGCTCCAAGATTCACCGCGTTTATC 35612 29 100.0 32 ............................. ACGTTTTCCCACAATGAAATCGCGTTCGTAGT 35551 29 96.6 32 .............T............... GAGATCCGTTTGCCGCACTGGAGGCGGCGTTA 35490 29 96.6 32 .............T............... GCCCGCAATCGGATGCTGTCACGTGAGCGTGA 35429 29 96.6 32 .............T............... AGCCTGGGACTATCAGTTATGACCACGAAACC 35368 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 35307 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 35246 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 35185 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 35124 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 35063 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 35002 29 100.0 32 ............................. GCACAATTACAGTTTGACGCGGTGCTGTCATT 34941 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 34880 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 34819 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 34758 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 34697 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 34636 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 34575 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 34514 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 34453 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 34392 29 96.6 0 A............................ | A [34365] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGTTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55143-52980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBV010000013.1 Salmonella enterica isolate 2214_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55142 29 100.0 32 ............................. CTCGACACGCTGAATAAAACTAAATCAATGTG 55081 29 100.0 32 ............................. TCGTCACTAGTACGTGACCATATAGGCCGGAT 55020 29 100.0 32 ............................. AGTATTTACCCAGCGTGCAATCATGTTGAGGT 54959 29 100.0 32 ............................. AGATCGGCAGTGTCATAACAGCCCGCCACTTC 54898 29 100.0 32 ............................. ATCTTATTGTGAATCATCTGCCCTATGCCAGA 54837 29 100.0 32 ............................. CTGGGAGATAGCCAAAAAACTGGGTAACGGCA 54776 29 100.0 32 ............................. ACATTGACCTGTTGACCCGTAACGGAATCGAC 54715 29 100.0 32 ............................. CCGTTACGGTTGATACGCGCCAGGTCACTGTT 54654 29 100.0 32 ............................. CCGTGTGCGGTCTGTGCGCCGCCGTTGTTAAC 54593 29 100.0 32 ............................. CGTTGCAACTGGAGATCTTGCCCTGTATCGAT 54532 29 100.0 32 ............................. GTGGCTGGTTTCCGATTATTCGCGAGTCATAC 54471 29 100.0 32 ............................. GCTCTTGCGCGAGGTGTGCGCTCAGAGGCCCT 54410 29 100.0 32 ............................. ATACGGAATCTTATTTTTCTGTGTTATTTCAA 54349 29 100.0 32 ............................. CTGGCAATAAGCCGCACTTTTGATAACGACGT 54288 29 100.0 32 ............................. TTCAGGGAGGATTTACAGGCCCGGTCCCCACC 54227 29 100.0 32 ............................. TTCGTTGTTAATCCAGTCCTGCGCCTTGCGGT 54166 29 100.0 32 ............................. GCAGAAATTCGATATTTGCAACAGGTCGGCAG 54105 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 54044 29 100.0 32 ............................. GGGCATTAACCTGTTGTTTTTATTACTGGTAA 53983 29 100.0 32 ............................. GTGAATCTGCTGGCGCAGATCAACCGGCAACG 53922 29 100.0 32 ............................. ACATGACGCGTGAGGTGCCGTTCCTGGTTGAA 53861 29 100.0 32 ............................. ACCGGACGACAAAAACCGAAAATGACAAACAC 53800 29 100.0 32 ............................. GAACGTTATCCGCAACAGCAGCCGCCACGTCA 53739 29 100.0 32 ............................. GCAAATTTCGACAGTGAGCAGGCTATTTCAGC 53678 29 100.0 32 ............................. CGATCTCCTGACGCTCCGCGACCAGTTCAAGC 53617 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 53556 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 53495 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 53434 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 53373 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 53312 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 53251 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 53190 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 53129 29 96.6 32 ..............T.............. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 53068 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACT 53007 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGAGCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //