Array 1 1075-1434 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACBHA010000672.1 Salmonella enterica subsp. enterica serovar Typhi strain 61 NODE_672_length_1465_cov_3.095101, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      1075	    26	  89.7	     0	..........................---	-                               	Deletion [1098]
      1101	    29	  89.7	    32	CC.A.........................	ATCCCCGCGGAGGTTGCGCAACCGGTGTTTTA	
      1162	    29	  96.6	    32	...........A.................	TAAAACTATAACCAACATTAATCTTTTTTAAT	
      1223	    29	 100.0	    32	.............................	CGCGCCAAAGAGGGCGACGTAAAGGCGTATCT	
      1284	    29	 100.0	    32	.............................	GCGGTAAAAATCACGGTCGGCATACATCGTGG	
      1345	    29	 100.0	    32	.............................	CAATTCACGCGGCGGCGATTGGCGATTCGCGT	
      1406	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         7	    29	  96.6	    27	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACACCCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA
# Right flank :  ATCTGTCTGATATCCGACACGGGTTGCTGTC

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [60.0-25.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0.41   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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