Array 1 2416-149 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOK01000025.1 Vibrio cholerae strain P19-CHT78-07 25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2415 32 100.0 34 ................................ TTCAACAATTCAAACAGTGGATCATAAGTTGGTT 2349 32 100.0 35 ................................ ATAAAGCTCATATAAACGCCATAAATTTGCATTAA 2282 32 100.0 33 ................................ AAAGAGTCCAGAGCAAACCGCATACATTAAGCA 2217 32 100.0 34 ................................ AGCGTATGCAAAGCAGATCCTGTAGTGACCTCCC 2151 32 100.0 34 ................................ CCGTCATGCCAAGTGAAGATGCGAGCCGTGAAGA 2085 32 100.0 34 ................................ AATAACTGTGACATGGAAGTAACAATGAGAGGTT 2019 32 100.0 34 ................................ TCGATCTCCGTTTCGCCAATGTAGTGGCCATGAA 1953 32 100.0 34 ................................ ATTAAATCCCCAAAAAATACGACGTGTACTAATC 1887 32 100.0 34 ................................ ACCCAAGATTTGCGCACCATGGCACTCACGGGCG 1821 32 100.0 34 ................................ ATTTTCGCCCTTTTGGGCAACGCGCATCAAAATG 1755 32 100.0 34 ................................ GAGGTCCAAACAATGTGTGGGAAATGGTTCACCA 1689 32 100.0 33 ................................ CGCCCTGTTTGGTGAGTTTGGTGAGCCTGCCGT 1624 32 100.0 33 ................................ TGCCAAACGCTGATACCACTCGCGCAACCAGTC 1559 32 100.0 34 ................................ TGGCCAATTAAGAAAAATTGAGTCAAGAGATACA 1493 32 100.0 33 ................................ TGCCACTGCGGCTGAAGAATTGAGAACCGTTGG 1428 32 100.0 34 ................................ AGATACCCGCGCATTCCTTTGAGAACTGCAAGAA 1362 32 100.0 34 ................................ TCGTTATTGCTCATGATCTATCCCTTGCGTTTGG 1296 32 100.0 33 ................................ TGGTGCGCCTTCGGCGACCTCACCACGCAAACC 1231 32 100.0 34 ................................ ATTAACGCCCTTTTCCGCCTCGTTAATGACATTT 1165 32 100.0 34 ................................ TGGTAACACCGCAATCGTGGTAGGTCGGCACAGG 1099 32 100.0 34 ................................ AGTTTTTGCGCACCAAAGAAACCGTTCTGCTTGT 1033 32 100.0 34 ................................ GTTTTCGCCCTTTTGGGCAACGCGCATCAAAATG 967 32 100.0 34 ................................ CGGTTTAAAACCATGAATGAATCAGCTATTCAAT 901 32 100.0 35 ................................ AAGCATCAAGCTGATACTGAAAGAGTAACCGTTTC 834 32 100.0 33 ................................ CCATGCTTTTAGCTCTAGCGCCCAACGTTCCGC 769 32 100.0 35 ................................ TTTAAGCTGGTAAGCTGCTGCGCCCATCACCCAAG 702 32 100.0 35 ................................ TGAGTTGATCGGCTCAAAACGCAGGCATGTACTTG 635 32 96.9 33 ...............................C ATGAATCCTTCAAAGGTGATCCAGCTGCGTCCC 570 32 96.9 33 ...............................C CATCATCTTGAGTGGACCCCAACGCGTGGTCAG 505 32 96.9 33 ...............................C AGTTACAGCACAAGTAAAAAAAGGCGAAAGAAA 440 32 100.0 33 ................................ ATGGTCACTTAAGCTCAAATGACATTAGCTCAA 375 32 100.0 33 ................................ TAACCGCTGCAACATACGCAGCGAAACGCCAGC 310 32 96.9 33 ...............................C AGAATAAGGCTGAAGTAAAAAAGGTAATTGTTG 245 32 96.9 33 ...............................C TCTACGCTCACGATGATGCGGTAGACCAGCTCA 180 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 35 32 99.6 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGTCAAAAACGCCTCAGACAATTAGCAAAGGTATGTTTAGATAATGGAGTAAGGGTGCAGTATTCTGTATTTGAATGCGACATAGATGCCGCGCAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCCATAGATATATTCAGAGATACCCTAATATTATAGTCGCTAGGCTTGAGTTCTCAGTAAAATACTGGGGATCTAGCGATTGCATAAGCTCTTTAAAAATATAGGAAATAATTATCTGTATAGATTCACACAAAGTAGTTTTGTGCTACCGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTTTGTACGTGCCTCTAAGAAGAGGCA # Right flank : TAAGTATTGTCACATTATTGCAGGCAATTTGTTGCCCGTGAGCAAGTTTTTGCCTCGCCAATTTTCGCGTTATCATGCGCTTAAAGCAGAATAAGCGAGGATGTCAAAGCCATGACAAAAGATATTAGTCGGTACAATATGCGTTGGGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 24280-26650 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOK01000134.1 Vibrio cholerae strain P19-CHT78-07 134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 24280 28 100.0 32 ............................ TGTCGAGGGTTCTGTTTTTAAAGGTCTTGTTC 24340 28 100.0 32 ............................ GCTCTGGCTCGAATCGTGAGTTTCGCATGACG 24400 28 100.0 32 ............................ CGTACAACCAACGGGTAATGTTGCAGCGGGTT 24460 28 100.0 32 ............................ TTCACGTTCTTGGCCTTCGTATGTCACCTTGG 24520 28 100.0 32 ............................ GTCAGAGAACGCGCGGTTTGTCTCATGAAAAC 24580 28 100.0 34 ............................ ACAAACGAACCTTCTTTACCCAAATCAATTCCAA 24642 28 100.0 32 ............................ TCTGCCGCCCTTGAAGCTGATGTTGTTAACGG 24702 28 100.0 32 ............................ TTAAAAATTCTTAATGGTTTAGTAGAGATATC 24762 28 100.0 32 ............................ AGCCGCGAACGGCGTGTTAGTCTCAGGGGTAA 24822 28 100.0 33 ............................ CTTATCGACAAGCACACGCCGTTATACCTGCAT 24883 28 100.0 32 ............................ CGCTAAATATTGTGGGGTGGTGTCCAATGCTT 24943 28 100.0 32 ............................ TTCATAAGGACCAAGAATGATGCTAACCTTTT 25003 28 100.0 32 ............................ AGTTAGCGAATCAAGATCAAGATCAATTTCTG 25063 28 100.0 32 ............................ TCAAACCTTGATCCTTACTGCTGCTTCTGGTG 25123 28 100.0 32 ............................ TATTACCGAGACTTCACTTTTCATCTATCAAA 25183 28 100.0 32 ............................ AGAAAGGTCTTGAAGCAGCCAAAGCTGAAATT 25243 28 100.0 32 ............................ TAGTCACTCCCTATTTAATGTTGCGCTTGCCG 25303 28 100.0 32 ............................ ATTTGACTGGACAATGTTTGACGATCAGCCCT 25363 28 100.0 32 ............................ ATCGCAAGGGATTGCATTTGATGAAACAAGAT 25423 28 100.0 32 ............................ ATGATGTATCTCCTATAAAAGATTGATGAGTT 25483 28 100.0 32 ............................ TGATCGGCGAAGATTTTGGCGAACTCACCTTA 25543 28 100.0 32 ............................ GTTGGCGAACTTTCAACAACTAAAGCCCTTCG 25603 28 100.0 32 ............................ AGCATGGGAAAGGCGATGATCATTCACGGTGT 25663 28 100.0 32 ............................ ATTATCGAGCCTAGCCACCTCGTAACCTTTAG 25723 28 100.0 32 ............................ AATTGATTGGAGCGCATAATGATTTACTTACG 25783 28 100.0 32 ............................ ACCAGCCGCGACCGACTGAGAAACACCACTCT 25843 28 100.0 32 ............................ TATTTGGAAGCGCTGGCCTTTCTGGGGCTCTC 25903 28 96.4 32 ...........T................ ATAAAAGAAAAACTGTCACCGAAAGTGTTAGA 25963 28 96.4 32 ...........T................ TGATTCGTGCGCAAAAGAGCGAAAAGCTTATT 26023 28 96.4 32 ...........T................ AAGAATCAAAGAACCCAAAATAGTTGGATTTT 26083 28 96.4 32 ...........T................ ATAAGCCGACGTAATGCGAAGTAAGAAACAGC 26143 28 96.4 32 ...........T................ TAACAGTCTTACGCTTAGCTCCTCCATGCTCT 26203 28 96.4 32 ...........T................ ATAGCAGAACTGGAGTAAGTGGCATTGTTCAT 26263 28 96.4 32 ...........T................ GTCACCGTTGGCATTAATGGCATCGACTTTAA 26323 28 96.4 32 ...........T................ TGACAAACGGTCAGCTTCTTGAAACTGGCGAA 26383 28 96.4 32 ...........T................ CAGATTCGGCGTTTAAGTGCAGCGCTTGATAT 26443 28 96.4 32 ...........T................ AATGTCCGGCGATGTGGTTCATGCTTGCTCCT 26503 28 100.0 32 ............................ AGTCATATCGCATTCTCTCCCCAAATCACCGA 26563 28 100.0 32 ............................ ACTTACCTGGGTTGGGTTTAGTGCGTGGGTCA 26623 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================== ================== 40 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCACCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGTTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCACCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //