Array 1 116377-118234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZC010000005.1 Salmonella enterica strain 20REF-1018 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116377 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 116438 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 116499 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 116560 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 116621 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 116682 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 116743 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 116804 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 116865 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 116926 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 116987 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 117048 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 117109 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 117170 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 117231 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 117292 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 117353 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 117414 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 117475 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 117536 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 117597 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 117658 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 117719 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 117780 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 117841 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 117902 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 117963 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 118024 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 118085 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 118146 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 118207 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134906-137009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZC010000005.1 Salmonella enterica strain 20REF-1018 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134906 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 134967 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 135028 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 135089 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 135150 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 135211 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 135272 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 135333 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 135394 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 135455 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 135516 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 135577 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 135638 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 135699 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 135760 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 135821 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 135882 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 135943 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 136004 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 136065 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 136126 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 136187 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 136248 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 136309 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 136370 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 136431 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 136492 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 136553 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 136614 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 136675 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 136736 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 136797 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 136858 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 136919 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 136980 29 100.0 0 ............................. | A [137007] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //