Array 1 45371-46335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFRV010000010.1 Streptococcus dysgalactiae subsp. dysgalactiae strain SDSD57 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 45371 32 100.0 33 ................................ CACAACCTTAATCAGAGCCGCCCGTGGACTGAT 45436 32 100.0 34 ................................ TTTTTGATTAGGGTCGTAGTTAAAAAAACCAAAG 45502 32 100.0 33 ................................ CTGATTGCTTAATTATTGAAGTATAAAAAATTC 45567 32 100.0 35 ................................ ATCTTAATGAGCGTAAAATCGAAGCCGAACTTGGC 45634 32 100.0 36 ................................ GGTCATGATTGCCCTAAAAAAGTAAAAGAATGGTGT 45702 32 100.0 34 ................................ ATTTAAATCTCCAATCTTAATTTAAGTCAAGATA 45768 32 100.0 36 ................................ GCTTCTTCAATATTCATCTCGCATCTCCTTTAAAAC 45836 32 100.0 36 ................................ TGCATATCCACTAGCAGTCGCATAACCTGCGTCCTT 45904 32 100.0 35 ................................ CCTTAAAGGTTAGCTTTGAGAAGTAAATCCATACC 45971 32 100.0 36 ................................ AATATTTTCTTCCGCGTTTTTCTTAGCGCTGAAGCT 46039 32 100.0 33 ................................ TATTAGTGGCTGATATATCTTTAAAAGTAGTTG 46104 32 100.0 34 ................................ GTAAAGGCGACAGATGAGCGATATGATCCAGATT 46170 32 100.0 35 ................................ ACACAAAGTTTTGGAAGGTGTTCCAAACGTTGATG 46237 32 100.0 35 ................................ TTCGATGATCTCAACCCGAGGAGCAACGAAAGGTC 46304 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 99.4 35 GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATTTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACATGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGTTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAACGTTTAGTGCGACTCGAGGTTTCACAGAAGAACATTGCTTGCTCGCGCAAAAATCACTTCAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTTTGCCATACGTTTCTCTATAAACTGCGTTATTTGGCGCA # Right flank : CCTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTGTCTTCTCCCCTCTCTTCCCCCTCACATATGCTATAATAAGCTTAATAAATGCATGGTAAAGGAGTTAGGATGGATAAGGTTCGGTATGGGATCGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATACGTCGATTGATGCCGTTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTACTGGCAGGCAAGCATGTTCTGGTGGAAAAACCATTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37265-37097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFRV010000012.1 Streptococcus dysgalactiae subsp. dysgalactiae strain SDSD57 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37264 36 100.0 30 .................................... TTGTAAATTTCGTCAAAACTAGTTTTTGCT 37198 36 100.0 30 .................................... GTTTGAGGGTTTCGTCCTTTACGTGCAGAA 37132 36 86.1 0 ............................TTT..TT. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTAATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTCATTTTTGTCAATAGTGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTAAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AACATCGTCAATGGTAACTTGAGAGAGAGGGATAAAGACCATATCCTTATGCCTTTCTATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTAAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGATTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGCTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGAACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCCGATTCAAGAGACTCGG # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //