Array 1 31895-31329 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCJ01000001.1 Aggregatibacter kilianii strain PN_491 NODE_1_length_315598_cov_49.7848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 31894 32 100.0 34 ................................ CAAAATTTTCAAATTGTCGCCCCACGTTTTCCCC 31828 32 100.0 34 ................................ GCTGATTACCTTAAATCTCGCTTATCAGGTGTAC 31762 32 100.0 35 ................................ CGTGGCAACCAATTAGCCATGGCAACCGGTTATGC 31695 32 100.0 35 ................................ GGCACACGCGTAGAAATACCGATTAGCTTATCAGT 31628 32 100.0 35 ................................ ATTACAATTCCTTTAATGTTGGTGAAGATAAAGAG 31561 32 100.0 36 ................................ CTTTCTTGACTTGGACAGGTTTTCCCGCGCCTTTTC 31493 32 100.0 35 ................................ TAAAAGAAATCAACTTCAATTAGCCTATAAAAAAT 31426 32 100.0 34 ................................ ATTTTTGCCCTCTCTCATATCTAACCAAGCCCAT 31360 32 93.8 0 ..........................AA.... | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 99.3 35 GCAGTCGCCTTCGGGCGACTGTGTGTTGAAAC # Left flank : TCATGATTTCCCCCAAATTGAAGAAGAGGCCGGATTTCAATATAAGTGGGTTATTCAGAAGATAGATCTGTCAGCGTATCGTTCTCGTCTTGAGGAGGAAAAACTGCTAACCTTACTCTTCAATAAACTGTACGCAGTTGAACAAAAGGCTTTGCTGGAACAGCGGATTGAGCAGGCGAAAGCGCGGGATAACGAATTGAAACAGCTTGTCGTAGATTTTCATTCATTCAAAGCGATGATTGATGTTCAGCGGTAAGTTACAAAGGTATTCTATCGAGAGTATTTGAAAGGGCTGGGATTATCGTTTATCTCGCTAACCCTTAGTTCTCATCAAAATCTGATTAGGGTAGCGATCCCGATTTTCTTGAACAATTTGGATAAGTTAATTCATTTGTATAACTAAGATGAGCTCGTTATACTTATCCAACTCCCCATCTAGAAATTAGTCAGCGAAACATAGCAAATAATCTACTGATATTTCTTCCATTTTTAAGTAGGGA # Right flank : AGTTACACCTAAACTCTGATAACAAGTCAAAGCATCTTGTTCCCAAGGTGCTTCTCTCCCCACCCCATAATCCCCCTTGCCCTCGCACTGCAAAATAGATAGACTAAACCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACGAGAAAATCACACTTCCTTTCTTTTTCTCTTCTCTCATTCGTCATTATTGTTAATTATCTTTTTAATTTTAAAAGGGAAAATTATGCAATATGGTTTCTATTACCCGACCGTAAGTTGCGGAGGGTGCTATGCGTAAAATCGTGCAGGCGCTGACCATTGCCGGGTCGGACAGTGGCGCCGGCGCCGGGATTCAGGCGGATCTAAAAACTTTTCAAATGCGTGGCGTGTTTGGTACGTCGGTGATTACGGCGGTGACTGCGCAAAATACCTTGGGCGTGTTTGATATTCATGCTATTCCGCTTTCAACGATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGTCGCCTTCGGGCGACTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33903-33473 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCJ01000016.1 Aggregatibacter kilianii strain PN_491 NODE_16_length_50897_cov_42.1395, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 33902 32 100.0 35 ................................ TAGGGACGTTATCACTTCATCGCCTGTTTATGCTT 33835 32 100.0 35 ................................ GCGGCAAAGAGCGTGAAAATGCTATTTGTAAAGAA 33768 32 100.0 34 ................................ TGTAACGGATAATCCAGTTAAAAGTTTTGGTTAT 33702 32 100.0 36 ................................ TTTGCGAATGTCTGTGATTACATTGCAGATTAGACC 33634 32 100.0 34 ................................ TACCCAGAATGAACGAACCACGTTCAGTCCACCC 33568 32 100.0 34 ................................ GACAGCTCGGCTAGGTAATTTATTAACGGATTTT 33502 30 90.6 0 .................A......--...... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.7 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTTTGATGAGGTAAACCATGTTAATGCTCATTACTTATGATATTTCTTTGGAAGACCCGAACGGGCAAGCAAGATTGCGCCGTATTGCTAAACATTGTTTGGATTATGGCATTCGGGCGCAGTATTCGGTGTTTGAATGCGACGTCACGCCGGATCAATGGGTAAAATTAAAAGCAAAATTGTTGGCGACTTATGATCCTGATTGTGATAGTTTGCGTTTTTATCATCTGGGTAGCAAATGGCGACATAAGGTGGAACATCACGGGGCGAAACCTGCCGTTGATGTCTTTAAAGATGTACTTGTTGTCTAGCGCTAACCCGTAGTTCTCATCAAAACCCGCTTAGGATAGCGATCCTGATTTTCTTTAACAATTTGGATGAATTAATTTATTTGTATAACGACAACAGGCTCGTTATACTTACCTCACTCCTCATTTCGAAATCAGTTAGCGAAATACAGTACATAATTTACTGATATTGCTTGCTTTTTTGAATAGGGA # Right flank : TTTACCTCGTATAGCAGTTAAAAAAACACGGTCTAGGAAAAGTATTTGAAGATTTTGGTGTCAGCGTTGCAACATCCCGACGAAATCTGGACGCGCACAGAGCGCTGGCTGAATGTTATTTAGAGCAGGCTAGCACCGGTGTGATGTTGTATTACCGGGATAGTGAGGATCAAAAAACTCACCCGCCGCCACAGATGAGTCTCGCCGGGTGTGGGATTTGAGGTCCTGGCGGGGACTGCCCACCTGATGCGTTGAAATTAATGTAGAACAAAATATGACCGCAGTCAACATCGAGCTTGCAGCCTCTATGTGTTGAAACGCTAAGAGCGTCAATATCGGCAATGTCCGTTTTGCAGATTTCTTAATTCCTTACGCCATTTTATTGCGTTGCAGTTCACTTTAAACGCCTTAAAATTCGTTAACGCGTTCTCAAAGTCGGCTTTAATTTTGACTACGAGGGTTTAATTATCTGCTATGAGGTAACCTAAAATGGATAAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //