Array 1 34-1599 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACKO02000050.1 Neisseria sicca ATCC 29256 N_sicca-1.0.1_Cont49.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 34 33 97.0 32 G................................ GTTTTAAGGAATCAGCATATAATCCCGACTTT 99 33 100.0 34 ................................. AAAAATGCCTGAAAACGTCGCCTTTTTGAACATA 166 33 100.0 34 ................................. CATAAAAGGTAGTCAGTCGAAAACCATAACCGCA 233 33 97.0 34 A................................ ACTTCGGCGGTCAACAAAATACCATCCTTTTCGA 300 33 97.0 33 A................................ ATCTGTGCCGCATCCATGCTCGCTGAAGAAGTT 366 33 97.0 34 T................................ CAAGTGAAAGAGCCTTACAACAAAAAGGCTACGA 433 33 100.0 34 ................................. CGAACATCACAAAATTTTCGGTTCACGCACACGC 500 33 97.0 33 G................................ GGGTATTCCCGCGAGACCTAGCAAACCTATTAA 566 33 93.9 35 A..............................C. AGACTAGAAAGCCTTAAAAAAAAAACAGTCGTACT 634 33 93.9 33 A...............................A CCATGTTTTCACGGAGGACTTGCCAAAGCTGGC 700 33 97.0 32 G................................ GCTATAAAAATCTTTTGCCACGTCGCAACGGG 765 33 97.0 33 T................................ AGTAGCCACCGATAGCCCTTCATACGAAACTAG 831 33 100.0 41 ................................. GCCGCCCTGATCCCTACGCTGGCGGTAACCACTTTGTGCGG 905 33 97.0 34 A................................ CGATATGTTAACGCGTTAACACGTTAAGTCAACA 972 33 97.0 33 A................................ AGACAATTCAGGGTATGCGGTCAGGTAATCGAA 1038 33 100.0 33 ................................. CTACGGTTTGAGTTTTTTATGTCTGATGTTCAT 1104 33 97.0 33 G................................ CGCCTCCCTCATCGGTACGGGAGGTGTCCCTTC 1170 33 97.0 33 T................................ CGATGTTTTCTGCAGGTATTGGAATTGGGAGGT 1236 33 100.0 33 ................................. CATAACAAGGATACAACGCCTAACCGCTTGTCG 1302 33 100.0 32 ................................. TGCTGCTGATTCTCTTGATTTTGATTTTGCTG 1367 33 100.0 33 ................................. CTCGTCCAGACTTGAAACCAAATTCCACGCTCG 1433 33 100.0 31 ................................. AAGAAATTAATTGCATTGATTTATTTTCTTG 1497 33 97.0 37 G................................ CTGGTTTGTTCACAGGATGCATTTCTTCGACCAACAA 1567 33 90.9 0 A..............................CA | ========== ====== ====== ====== ================================= ========================================= ================== 24 33 97.6 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCCGGTTCAGACGACCTCTTGTTTGTGCGGACAG # Right flank : GATGAGCGTCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-3435 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACKO02000018.1 Neisseria sicca ATCC 29256 N_sicca-1.0.1_Cont17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1 32 97.0 36 -................................ CTGGTTGTTCACAGGATGCATTTCTTCGACCAACAA T [26] 70 33 97.0 34 A................................ AAGATGAGCGTCAGGATGACCTATTACAGAATCA 137 33 97.0 34 G................................ AATGAAAGACCTAGTAATAGATTTTGACAAGTTG 204 33 97.0 33 G................................ TGTAAAAGAAAAAATCATGTCAGATGGGAATGC 270 33 97.0 34 C................................ GATGCAACCCGTACTAAGACGCAACGTCAGCGCG 337 33 97.0 34 A................................ TTGGTATAAATGCGTGACGTCTCTGGACAATCCA 404 33 97.0 35 G................................ TTTCATCACTGCCTTTCTTAACACTACAAGATCCG 472 33 97.0 34 C................................ TGACCGACATCAACGGCAATCTCTTATGGTACGG 539 33 97.0 36 C................................ GACTGATATTTCATGGCGCATCCGCACCGCGCTGAA 608 33 100.0 34 ................................. CCTCGTGACAAGCTGTCCAACCGCACACCTCTCA 675 33 97.0 34 A................................ CACATAAACACCTTTTAAACGGTCTTTAGCAGCC 742 33 100.0 33 ................................. GTGGTCTTCGGAGCCAAAGCCACCAACCGCTCC 808 33 97.0 36 G................................ ACAAAGACGACCTTGCCGCGCAAAATACGCTACAAT 877 33 97.0 34 A................................ ACAACCCGACCCCAATCCTGACGGCAAGCCTGGC 944 33 100.0 32 ................................. AATACCTTCTGATTCGATGAAACGAGAACCTT 1009 33 100.0 38 ................................. AGACTGGTAACAATCGGAACATTCAAACAAATTCCGAT 1080 33 97.0 32 C................................ AGTTTATGGGAAAAACTGTCTGATTCCGCTTG 1145 33 97.0 33 A................................ CTTACGGATACCCCTTGACGCACGGACAAAGAA 1211 33 97.0 36 A................................ CAGGGGAGGACAATTATGCGCGGGCAATGGTGTTGA 1280 33 97.0 33 C................................ CGTTAAGGGAGCGTAAAACACATTTAGAACCCC 1346 33 100.0 33 ................................. CTGAGAAAGCAATCAACCTAGAATTAAAACCGT 1412 33 100.0 34 ................................. CTGAGCAACCGAAGCCACATCTATCAGAAGATGA 1479 33 100.0 32 ................................. TGTTGATTTCGGTATTCTCGGTCGGTATCTGA 1544 33 97.0 33 C................................ CATTTTCCCCGACTAGGATATTCTTATCCTTCA 1610 33 97.0 34 G................................ GGCAATTGTATGGTTATCATCTTCAATCTCCGTT 1677 33 90.9 33 C..............................CA TTCTTGAAACTTGTTCAATTGCCTGAGCCGTAT 1743 33 100.0 33 ................................. CCGAGCCGTCGGCGGCGAGACTGGGGGTGTGGG 1809 33 97.0 33 G................................ TTTGGCTTTATCGTAAATACGGCAATAACAAGA 1875 33 97.0 34 C................................ ATTGAAATGTTGAATAAGTGATGAAGCTCCTTTA 1942 33 97.0 33 C................................ GCTGGCCACCTGCCGACATCAACGGTCAGCGTT 2008 33 97.0 33 G................................ TTCGGCGGCGTGAAAAAACAACCTCAAGTCGTT 2074 33 97.0 32 G................................ ATCGGATTGATACGGCCATGCAAGCGGCCAAA 2139 33 97.0 33 C................................ ATGGCTTGGAAAGGCTACAACGTTTATCAAATC 2205 33 100.0 33 ................................. AATAGCAATATTGCTTAAATAGCGGAGACCGAA 2271 33 97.0 33 C................................ TAGTACGGCAAGGCGAGGCAACGCCGTACTGGT 2337 33 100.0 33 ................................. CAGTTGTTCCCGTTCCAGTTGTTCCCGTTCCGG 2403 33 100.0 31 ................................. ACCTCGATTTCACGTATCAAACGCGCCATTT 2467 33 97.0 33 C................................ TGGGCATCAAGCCGTCGTCTGGCGTCGCACAAA 2533 33 97.0 35 G................................ AATTGATGCCAATTTACCGCCACGTGTATATGAAT 2601 33 97.0 33 C................................ TTTTATGGTAATTGATGTAATTTGATACGAAAT 2667 33 97.0 37 G................................ GGCTGGGGAGAGGGTGGCTCTATGGGCGGCTGCACCA 2737 33 97.0 33 G................................ CTCGGGGCGCGGGTTATCGACATCAACATGGGC 2803 33 100.0 35 ................................. CCTGATATGAGCCAGCGGGAACAGGAAAATATCCT 2871 33 97.0 34 G................................ TATGTCGTTGTTGCATTCGGCGACGCGGTAGAAA 2938 33 100.0 34 ................................. GCCATCGGGCATCATATGATGATTGGTGAACTTA 3005 33 97.0 34 C................................ CATCCATGAGGACACTTTTTCGCTTCTCGCCGGT 3072 33 100.0 35 ................................. GAAGTTTGGGATGCAAAGAGTAGTCAATATGTTGA 3140 33 97.0 33 C................................ CTTGATATCAATGTGGACATTATCAAGCTGCAA 3206 33 97.0 34 G................................ GCCCACCCTAACCCAGTCAGCGGCAACCGCCTCA 3273 33 97.0 32 A................................ CATAGGCGGTCTGCGGGGCTGTTTGTGGCTGT 3338 33 100.0 32 ................................. ATACGCTTCGTTTTCGGTTTTTGTTTCAAAGT 3403 33 93.9 0 C........................A....... | ========== ====== ====== ====== ================================= ====================================== ================== 52 33 97.7 34 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : CCTGAACGCGCTCAAAGAGCATAAGTCCATCTTCCCAGCCGCTTTCAGGCAGCTATATATCAGTACAACTCAGAGATTTCTTACGACAAAGGTCGTCTGAAAACCTTATCAATCGGTTTTCAGACGACCTTTTTCAGTCATCAACATAAGCCCGATACTTTGGAATAGGCTATGGACATCAGACAGATAGGTCAGCCGATTCGGGCATCAGAATTTCACACCTTTATGCAAGGCTACGATGCCTGCGCTCATATTATGGTAATCAACGCTGTCGAAACCGGCATCCAGCATCATTTGTTTCAATGTTTCCTGGTCAGGGTGCATGCGGATGGATTCTGCCAGATATTGATAGCTGTCTGCGTCTTTGGCAATAAGTTTGCCCATGACCGGCAGCAGTTTGAAGGAATACAAATCGTATGCACCTTCCAGTGGCTTGTAGACTTTGGAAAATTCCAATACCAAGAGCGTTCCGCCCGGTTTGAGCACACGGTACATTTCTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4270-3875 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACKO02000013.1 Neisseria sicca ATCC 29256 N_sicca-1.0.1_Cont12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 4269 36 100.0 34 .................................... AAAACCTCAAGCCACAGATTAGCAGCATTGAACA 4199 36 100.0 42 .................................... CAACCCATTCTGTTTTAAATAGTTTTACTCTTGGAATGTATC 4121 36 97.2 35 ...................G................ TCCAGCCAAATTTGCAGGAAGACAAAAGACTTTGC 4050 36 97.2 35 ...................G................ AGGATCCACACACGGGCATCAGGGACAGTATTGAG 3979 36 100.0 34 .................................... TATTTCTGATTTCAATATCCCACGCATCATCTAA 3909 35 88.9 0 ............A........G........A..-.. | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 97.2 36 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : AAACAAGGCACATGGCAGTTCCCCGAACCCAGCCGCTTCATAGACGAAATGCCGCAGGAAGACATCAAGATTTTAGGGCGCAAAGGCGGCGAGCCGATTGTGAGCAAGGAAGAGGGCAGAAGCCATCTGGCGGGGATGCTGGATATGTTGGCGGCGAAAGGGAAAGGCTGAAACGAGAGATGGACCAGCAAAAGGTCGTCTGAAATAGGTTGCACATGGTACTCTTCTTTAATTTGAAGTGTTCCGGATTCCTCCTGTCAGCCTGAAAGGACAACAAATCTGTGTCAGCCTCAATAATTCAAAAGCAGCGTTGTCGAATGTAAAATACATGGCTATAATCCGCATTACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGATTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATACTAACCTTTCTTAACTGTATAGAAGATTGAAAATAATGAAATTTTTTGACCGAGTGCA # Right flank : TCAAACGGCCTTGATGATTCATCCCATCAAGGCCGTTTTTGCGTCATGCGTATTTTCAAGGTCTTAAAGAGGTCGTCTGAAAATGGCTTTAAGGGCATCTCAGGATATCGGTTTTCAGACGACCTTTTTCAACGATTTGAGGGTCGTCTGAAACGCCCGTCCTAGCAATAAGTAGCATATTCAAACTATTTCGTTTCGGGTATAGTATCGCCTGAACAGACTTTCAGGCAGGCTGACCGGTGCGGAAGCGACGTTTTATATGTTATCCCTAAAGATTCCCGCGCCGCCAATCGTCAGCCCGCCCTAAACCGTATGATGCGACATTGCTTTGGAGAAGCGCTGAAATGTTCAAACGTCCTGAAGAAATCATCGTCCTTGTCCTTGCCGTCATTTGGGTGGTGCTGACTTATTTCATCGCCGCCTTTCTCGGCGCCGATACTTACACCATCTTCCTGATTACCGGCCTGACGCTGGTATGGGCAGGCGTATGCTTCCGTCTG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : GTCGGAAGACTTGCCCCACGAATCGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 93325-93621 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACKO02000010.1 Neisseria sicca ATCC 29256 N_sicca-1.0.1_Cont9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 93325 33 97.0 33 T................................ CAAACCACCCATCTTAGAATTACCCTGACCGGA 93391 33 100.0 32 ................................. CGCCTGATATACACGCAACAGGATATTCAAGC 93456 33 97.0 32 T................................ AGCCCAAGGAACGCCATTGAAAGAAGTCACTA 93521 33 100.0 35 ................................. CATAAAGACACATTGGTAAAAAATCGCCGGATGTC 93589 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= =================================== ================== 5 33 98.2 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATATAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGTGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGATAGACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTAGGCAGCAAATGGCGACGTAAAGTAGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGACAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTGAGAGTTTAGCGAAATCGGGGCTGCGAAGCCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : GCCAGTAAGACGAACTGAAAATAATGTTTGCGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //