Array 1 138-475 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000025.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_49.50_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 138 36 100.0 38 .................................... TCCAAGTCCTCCAGGGACTCGGCGTCCAGCACCAACAC 212 36 100.0 40 .................................... ATAATCTCCTGGAGGCTCCTGCCCCCAAGAAAAGCTTCCC 288 36 100.0 38 .................................... GGCCACGGCGTCCAGCGTGGGCGCGTCCTCCTCCTTCT 362 36 100.0 42 .................................... TCTCACCACCAGAAGCACGAGCTTTTTCACCCTCTTTCCTCC 440 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 100.0 40 GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Left flank : ACCTTTGGGAGCGGAAGCCTTGGACGGCCATGGCGCGGGCGCTTTTGGAGCTCATCGCCTACGGCCTTAGGGTTCTTCTCTCCCTTCTCCCGCCCCCTCCGGGGTACAAGGCAATTTACTAGGCAAGCCCCCTCCTTG # Right flank : CCTGGAGCCACTTCCCGCAAGCCTTCTTCCTAGCTTTGGGCTGTAAAATCCCTGTATGGAACTCCTTCTGGTGCGCCACGCCCTGGCCCTTCCTCCTGAAGGAGAGGGAGAAGAGGCCGACGACCTGAGGCCCCTTGCTCCCAAGGGGGTAAAGCGCTTCCGCAAGGTGGTGCGGGGCCTCGAGGCCCTGGGGGTGAGGCTTGATCTCATCCTCACCAGCCCCAAGCGGCGCGCCCTGGAGACGGCAGAACTGCTTAGCCGCCTTCTGGACGGGGAAAGCCGGGTAAGCCCTCACCTGGCCGCTTCCCCCTCAGAGGCCCTCCTTGGGGAAATCCCCGAGGAAGGCCGGGTGGCCCTGGTGGGGCATGAGCCCTACCTTTCCCAGTTCCTGGGCTGGCTTCTCCTGGGGGACTACATGGGGGCTTCCACCCGGGAGGGCCTTGGGGAGCGCTTCCTCTTCAAGAAGGGGGGCGTGGCCTGGCTGGAGGGGAGCCCCCGGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 288-637 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000026.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_48.49_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 288 36 100.0 41 .................................... TCCCTGACTTTGGCCAGTTCCTCGCCAAACTCCTCCTTGAG 365 36 100.0 40 .................................... TTGCGAGCCCGCTTAACTTGGGCCCGCAGGAGGAGTGCAA 441 36 100.0 43 .................................... CCCACCGAGTCGGTACCCTCAGCACCCCCCGTGGTGACCACCA 520 36 100.0 45 .................................... CCGAAGGGTACAGTCTTTAAGGGTATACGCGCCCGTCATCGCGCA 601 36 72.2 0 .A........C...G..TT.A....A....CA.C.. | T [625] ========== ====== ====== ====== ==================================== ============================================= ================== 5 36 94.4 42 GTTGCAAAAGTCTTAGCCCCGTAAGGGGATTGCTAT # Left flank : TGGCGAAGGGCTTTTTGGGCACAGATTTTGACCAAGTACATGCTTCCAGTAAGGTGCTATACTGAGGGTGTCCGAACCCTCGGACGGGGATCTTGAAAAAGGGTTTTGCCTTGGGCAAGGGAAATATGCACTTTTCCCTTCTCATCGTACGGCCCGCATGGCCGTGAGCATGGGCCCAAACCCCGCAAAATGCCCTCTATACGCCGTGTGCATATTCCAGACTTCATCTTTCTCACAAACCCCCCCTCTGAGAACCCCGTCCAGGACGATGTAGAGGAGGGGGTAGAG # Right flank : TTGCTTAGAATGCTAGGCTTTAGCCTATGAAACGTCTTTACGTGATCAGCTATGACGTACCAGACGATACCCGAAGGATTAAATTGGCCGCTCTTTTGAAAAGCTATGGAGAAAGAGTCCAGCTTTCTGTGTTTGAATGCTATTTGGACGAGTCCTTGCTTTCTGATTTGAAGGCGCGTGCTCGTAGGCTACTAGACCTCACTCAGGACTCTCTGCGTATTTATTCCGTTTCTGGAAAAGTAGAGGTGCTTGGGGTGGGACCTTTTTACGAAGTGCAGCCTTTTATTGTTACCTGAACATAAGGGGGAATGACGCCTTCTGTACCCTTCGGGATGGAGCCTAGGTTTCCGGCGCAGAATAGAGGGGTGTTTGGGGTATTTTAGTAGATATGCACGATGAAGGGTTGGAAAATGTTTGGCAAGCCTACAAGGAGGCGGTTCGGGCCGGGGGCAACCCTCAGACCCTCTACCAGGAGCAGGTCTGGCCGGCCCTTCTGGACC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGTCTTAGCCCCGTAAGGGGATTGCTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 25473-25210 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000045.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_29.30_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 25472 36 100.0 44 .................................... ACGTATCAGAGAGGCCGCCGTCTGGTCATCCGAAAGGGACACCC 25392 36 100.0 37 .................................... TACGCCCCGATAAGGGCGTCCTCCGCGAAGAGGTCCC 25319 36 100.0 38 .................................... TTACGAACTTCTTCCAAGGCCTGAATGGCCTTGTGCCT 25245 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 100.0 40 GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Left flank : | # Right flank : CCTGCACTTCCTCAGCGTGCAGGCATGCCTTGTACCAGCAGTACCTCTTCCTTGAAAGGTTTTTCGGGAAATGGGGCAAGTAGCCCATAGGGGGCCTGTGGGGCTTCGTATAATGCCCCCATGCGGGTTCTCTTCATCGGAGACGTCATGGCCGAGCCTGGCCTGCGGGCGGTGAGCCTGCACCTGCCAGACATCCGCGACCGCTACGACCTGGTCATCGCCAACGGGGAGAACGCCGCCAAGGGCAAGGGCCTGGATAGGCGCTCTTACCGCCTTCTGCGGGAGGCGGGGGTGGACCTCATCTCCCTGGGCAACCACGCCTGGGACCACAAAGAGGTCTACGAGCTTTTGGAGCGTGAGCCCGTGGTGCGGGCCCTCAACTACCCCCCGGGGACCCCGGGGCGGGGTTTTTGGCGCCTGGAGGTTGGGGGGGAAAGCCTCCTCTTCGTGCAGGTCATGGGGCGGGTCTTCATGGACCCCCTGGACGACCCCTTCCGTGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 33896-32465 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000051.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_23.24_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33895 29 100.0 32 ............................. CTGGCTCCGGTCCGATACGAGGCCTCCACTCC 33834 29 100.0 32 ............................. CATAGAAGCGGAAGCGGGGACGCACCCCCTGC 33773 29 100.0 31 ............................. CCCACGGCAAGGGCGGAGCGCATGGCCTCCA 33713 29 100.0 32 ............................. CCGAAGGCCTGGAAGACCGCCTCGGGGATAGC 33652 29 100.0 32 ............................. TCTCCCTACGAAAGGACAGGGATGGCTACCTC 33591 29 96.6 32 ............................A TCCCGCCACTCTCCCTTACGGCCCTCGGCATA 33530 29 96.6 32 ............................A GCCGTATCGGCTCCATCCTGGGGCTCCCCTGG 33469 29 96.6 32 ............................T CCCTGAAGGGCGGGACATCACCGCCCCCTCCA 33408 29 100.0 32 ............................. GCCCGCTCCTGGTCAGCTGGGGGGATACCCTC 33347 29 100.0 32 ............................. AACCCATAGCAAGAGCCTTGCTATGGCATGGG 33286 29 96.6 32 ............................A GGTCGGGGCTGGAATCATCCGGCCCCGACCAC 33225 29 96.6 32 ............................A TGGTGGAAGCCGTGGACCCCAAAACGGTGGCC 33164 29 100.0 32 ............................. CGCGGGGGGCTCTATGCGGACCTGGAGATGGC 33103 29 100.0 31 ............................. CCACCACCCGCGTGTTGGAGGGGCCCCAGGT 33043 29 100.0 32 ............................. TGGTCCTCGGCCCACGGGAGCTCGGGCTGGAA 32982 29 100.0 33 ............................. GTGGTAGCTCTGGTCTACGGCAGGCCCGGTACA 32920 29 96.6 32 ............................T ATCTATCGTCCCTGCATCCGTTTCAGCCTGTG 32859 29 100.0 32 ............................. TAGGCCACAACGGGGCCAGGAGCCCTGTGGCA 32798 29 100.0 32 ............................. GATAGCGGCCACCGCGACAGTAGCCACCTGCA 32737 29 96.6 32 ............................A TCCTACCGCTTCCAACGCCCCTCCATTCTGCC 32676 29 96.6 32 ............................A GCCATTCCTAGTTTTCCGCCTTTGGGCCCCCT 32615 29 100.0 32 ............................. GGACTGCAAACGCCGGCACCGCCTGGAGGCAG 32554 29 100.0 32 ............................. CTGCGGCAACGACACTCCAGGCCGGGGACGGC 32493 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.7 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : CGTGGCC # Right flank : GAGGGGCGGCTTTGGTGTTTGATGGAGCCATGGCCGAGGTGGAAAGCTTTACCCTGGACCACACCAAAGTGAGCGCTCCCTACGTGCGGCTGGCGGGCAGGAAGCAGGTGGGGGGCGGCCTGGTGGAGAAGTACGACCTGCGCCTGGCCCAGCCCAACCGGGAAGCCCTGCCCACAGCGGCCCTGCACACCCTGGAACACCTCCTGGCGGGCTACCTCAGGGACCACCTGGAGGGGGTCATAGACCTGTCCCCGATGGGCTGCCGCACGGGCTTTTACCTGGTGGTGGAGGGGCCTTTGGAGGAAGAAAAGGTTTTGGTGGCCTTTGAAAGGGCCCTGCGGGACGTGCTCCTCCACCAGGGGCCCATTCCCGGGGCCAGCTTCCGGGAGTGCGGCAACTACCGGGACCACGACCTGGAAGCGGCTAGGGCCTGGGCCGAGCGGGTGCTGCGCCAGGGGCTTAGGGTGCAGGCCACGGTGCCCCTGGAGGAGGCATGACCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77232-78967 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000066.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_8.9_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77232 29 96.6 31 ............................A TCGCCGCCGCCATTGCCGCCTCTGATGAGGC 77292 29 96.6 32 ............................A GCGCCCCTTCAGGCCCTGGAGGGCGGCCTCAA 77353 29 96.6 32 ............................A CACGCCGCCGACGACCTACCAGTTTGGGGTGC 77414 29 96.6 32 ............................C AGATAGCCCAGGCTGCAGGGCACCCTGTACTC 77475 29 100.0 32 ............................. TTTACCACTCTTCTATTGAGCATCGTGCCACC 77536 29 96.6 32 ............................A CCGTGGTCACCCAAGCCCCTCCCACGAACCCG 77597 29 100.0 32 ............................. GGAATCGGCGGCCGCTTGGGCCCCGTTTGTGA 77658 29 100.0 32 ............................. TCCCGAATGTTTTCCAGGGACCGCTGGTAGAG 77719 29 96.6 32 ............................C GATGCCAAGGCGTCTAGCGATTCTCACACTGA 77780 29 96.6 32 ............................C GGGAAGACTATCCCGGAGAACGCCAAGTTTCA 77841 29 100.0 32 ............................. GACTAGATAGATTGCGGTGGCAGAAAAGGTTA 77902 29 96.6 32 ............................A GCAACCAACTTACGCATTCTTCACCTCCTTCC 77963 29 96.6 32 ............................C TCGCGGAACGCCGCCCGGGAGAAAGAGCACAC 78024 29 96.6 32 ............................A TACCCATAGGCCACCAGCCCAGCTACGGCTGC 78085 29 96.6 32 ............................C CTCAGCCGCCATCCGATCCAGGGCCAAGGCGA 78146 29 100.0 32 ............................. CCCTGGGGGTTAGCATATGTGGCCTATTAGGG 78207 29 100.0 32 ............................. CCGGACCAAAAGCTACCCCAAAACTGGGCATC 78268 29 100.0 32 ............................. CCATCTGTGGCGTGGGAGCAGCCACTCAGCTA 78329 29 96.6 32 ............................C TAAATAAGGGTTCGGGGTTCAACCCCCCAGGA 78390 29 96.6 32 ............................C GCTTTCGTGGCTTGCGGGAAAGCCCCCCACAA 78451 29 100.0 31 ............................. CTCTCCACCACCCTGGCCCGGAAGCGGCGCT 78511 29 100.0 31 ............................. CCGATGTAGTCCACCATGGGGTCCTCGGTCA 78571 29 100.0 32 ............................. GAGGATTTGGGGGGCGTCCACCACGACCCGGA 78632 29 96.6 32 ............................T GGCCAGCCCACGCTCCCGCTGGGGAGATACGG 78693 29 100.0 32 ............................. CCCCCTCCAGTACCACCACCCCCCTTCCCGAG 78754 29 100.0 32 ............................. GCCACGCCGATGGCTTCCAGGAGGGGACCGGA 78815 29 100.0 33 ............................. GAGCTGTTGCGCACCTGGCACGGTCACGTCCTG 78877 29 100.0 33 ............................. AAGCTTCTTAAGGTCCTCAATGGACTGGACCCC 78939 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.4 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : CTCCGAGGTGCGGCTTTTCCTACCCTGCGAGCTTTGCTGGTACCAGCGCATCTTCATGTACCCGCAGGCGGTCCTGCTGGGCATGGCCCTCTGGCGGCAGGACCTGCGGGTGTGGCCCTATGCCCTTACCCTTTCCCTCATCGGGGGTGGGCTCAGCACCCTGCACCTGATGCAACAGAAGTTCCCCAACCTCTTCACCCTGGCCTGCAAGCCTCCGGTGCCCTGCACCGTGGAGTACATCCCCCAGTTCCCTATCCCCCTCCAGGCGCTCATCGCCTTCCTGCTCATCGCCTTCAGCATGGGGCTTCTGGCCAGGGAAGTAAGGCGCTAGGGCAGGGCGCCTTCCCGAAAACCCAAGCCTGTGCTAGGCTAAAGCCAGCGCCACGCGGGTTCCTGGCCACGCACCACGGGCGCGGTGGACCTTGAAAACCTTCCTGGAATGGTTCCCCAAAAGACACATAAAGGGGGGTAAGCCGGGATTTTTGCCGTCTGGGTCATGT # Right flank : CCTCCAACCG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35195-35380 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000065.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_9.10_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 35195 36 100.0 36 .................................... CCGAACCGGAGGGACCAGGATCCTCACCCACAGCCC 35267 36 100.0 42 .................................... TCTACATAGACTTCCCACCCGTCAGTAGTCTGGACGATGGTG 35345 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 3 36 100.0 40 GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Left flank : GAAATAGGGGGTCCAGGAAGCCGGTTGCGAAGGGGGGAAGGAGAAGGGCTTCCTTAAGCATACCCCCGAAGTTCTGGAGATGCACCGGATATGCGCCTACTGCCCTTGCCTTCGCTGCCTTTCCTTGCTTTAGCATTTGATAGCTACTTCCACTGTCGGAACTTGACCGACGGAATGAGCGCTTTTTCCGCTATACAAAAGCGAAGCGATTTGCAGAAGGGCATTTGAAGAATAGATTTTGACTGAGTCCAAGCTTCCAGTAAGGTGCTATAATGCAGATGTCCGAAGCCTCGGGCGGGGAGCTTGACAAGGGGTTTTTGCCTTGGGCAAGGGGAATATGCGCTTTTCCCCTCTCATCGTATGGCCCGCATGGCCGTGAGCATGGGCCTAAACCCCGCAAAATGCCCTCTATACGCCATATGCATATTCCAGACTTCATCTTTCTCACAAACCCCCCCCTCTGAGAACCCCGTCCAGGACGGTGTGGAGGAGGGGGTAGA # Right flank : CTCAAGGGCAACAGGCGCACCCCAAACTGCCTGAACACCAAAGCCGCAAAAGCTTATCCCCAACAAACGGTTCGGTGGCCCAGCAATCTGCCCACGGCCCTGCATGGGGTGTGGCGGAGGCAAGGGAAGATAGCCGGACGGAACGCCCGGGCTTTCCGTCCTGCAAAAGGCCCGACCCCCTGAGGGGGGTCGGGGGAGCGGTTTTTGGGGGATGGGCTAGCGTCCTTCCAGGATTTCTACCACCAGGGCGGCCCCGATCAGGTTGGCCCCCAGGTCCCGCCGGATGCGCTCGGCCCTGGCCATGCGCCGGACGTCCTCCTCGCGGAAGTACCAGGCGCCTTCCACCTCCAGGGGTTCCACGAAGCCGATTTCCACGTAGGCCCTCACGGCCCCCAGGGAGAGCCCGTAGGCGGCCACGGTCTCCATGGAAACCCAACCACTACGCACGAGCATGGTGCACCTCCGCCAGCCGCTTCCAGAGGGCCTCCTCCTCGGGGGTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 1064-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000067.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_7.8_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1063 29 100.0 32 ............................. CAAGGGCGCAAAGGAAGCCTGGAACAGCGTCG 1002 29 96.6 32 ............................T CCGGATACCGGAGAACCTCTACGCCGTGGCCA 941 29 100.0 32 ............................. CTGGCTCCGGTCCGATACGAGGCCTCCACTCC 880 29 100.0 32 ............................. CATAGAAGCGGAAGCGGGGACGCACCCCCTGC 819 29 100.0 31 ............................. CCCACGGCAAGGGCGGAGCGCATGGCCTCCA 759 29 100.0 32 ............................. CCGAAGGCCTGGAAGACCGCCTCGGGGATAGC 698 29 100.0 32 ............................. TCTCCCTACGAAAGGACAGGGATGGCTACCTC 637 29 96.6 32 ............................A TCCCGCCACTCTCCCTTACGGCCCTCGGCATA 576 29 96.6 32 ............................A GCCGTATCGGCTCCATCCTGGGGCTCCCCTGG 515 29 96.6 32 ............................T CCCTGAAGGGCGGGACATCACCGCCCCCTCCA 454 29 100.0 32 ............................. GCCCGCTCCTGGTCAGCTGGGGGGATACCCTC 393 29 100.0 32 ............................. AACCCATAGCAAGAGCCTTGCTATGGCATGGG 332 29 96.6 32 ............................A GGTCGGGGCTGGAATCATCCGGCCCCGACCAC 271 29 96.6 32 ............................A TGGTGGAAGCCGTGGACCCCAAAACGGTGGCC 210 29 100.0 32 ............................. CGCGGGGGGCTCTATGCGGACCTGGAGATGGC 149 29 100.0 31 ............................. CCACCACCCGCGTGTTGGAGGGGCCCCAGGT 89 29 100.0 32 ............................. TGGTCCTCGGCCCACGGGAGCTCGGGCTGGAA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GCATGCGGGCCAGTTTTTCCAGGGCCCTGCCGTACTGGCGTGTGGGGGCCTGGTGGAACAAGAGGCGGCCGGCGGCGAAAAGGGCCAGGGCCTCCACGGGGTGGAGGGCGGGGGAACGGTCAGGGATGCGGTAAAGACCCCTCCCCACCTTTTCCACCTGGTAGCCCTGGTGGGCGAGGGCCTCGAGGTCGCGTTCTATGGTGCGCTCGCTCACCCCAAAGCGCTGGGCAAGTTCCAAAACCCGCATGGGGCGTAGCTTCAGGGCCTCGAGGATTCCCAAAAGCCGTTCGGCTTTAGGAATGTCAGGCATGGCTCCAGGTTAACACAAAGTTTCCCCGGGGTTTACAGGCTTGTCCAGAAAGTGCTAGTCTGAACTCAGCGCCTACCTCCCTGGTAGCTACTTGTGATGGCGCGGTGGATCTTGAAAGCTTTTCCTGGAAAAATCCCTCTCTATACACATAGAGGGGGGTCAAAAGGGGTTTTTGCCGTCTGGGTCAAGT # Right flank : C # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10750-11691 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000067.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_7.8_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 10750 29 96.6 32 ............................C GTTACCTCACCAGAGCCGGGGTAAACGCCTGC 10811 29 100.0 35 ............................. AGAATGAGGCCGCTTCGGACCTGATGGGGGCGATA 10875 29 100.0 32 ............................. AGGTCCCCGTGGCATTAGAAGGGCCCTCTATG 10936 29 100.0 32 ............................. TTGTTGGCGTATAGGGCGAAAAGAATCTCCTC 10997 29 96.6 32 ............................C CCGTATCTGCCGCGGCAGGAGCTGGAGGAGAT 11058 29 100.0 31 ............................. TTGTATAAGGCCAAGTATAGCCAAGGGGTTC 11118 29 96.6 32 ............................A CTTGGCCGAGATGCTAGAATGGAGTTGGCGGG 11179 29 100.0 31 ............................. TGGCCCTGGCCCGTAGGCTTCCCACGGGGGT 11239 29 96.6 33 ............................T GTGTTTGTTTCTCATAATGTTCCCAGCGTGACC 11301 29 100.0 31 ............................. CTGGTGGAAAGTGCGCGCGGCGGTAGCGTGC 11361 29 100.0 30 ............................. AATGAGCCTGCGGGCCCTCCGCTGGATAGC 11420 29 100.0 32 ............................. TCCCGGGTATCAGGGTGGAGTAGGCGGGTAGG 11481 29 100.0 32 ............................. GCGGCAGTCCCCACTAGGGTCCTCGAGGGCGG 11542 29 100.0 32 ............................. CTGGCTCTGAGCTAAAGCCACACCCACAAAAG 11603 29 96.6 31 ............................T GGTCGCAGAAAACCGCACCCTGGCCTCCCCC 11663 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 16 29 98.9 32 GTAGTCCCCACACGCGTGGGGATGGACCG # Left flank : CTTCCCTGAGGACGATAAGGAGGAAGACCCCACCTTTCCAGGTGGGCTTTGGGACCCCGCAGGAGAGGTAGAAGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAAGTGCCGAGGAGCCTTAGGGGAGAGCTGACCCGCTGGCTCCTAGAGGTGGACACCGGGGTATTCGTGGGCCGCCTGAGCGCCACCGTGAGGGAACTCCTTTGGGAAAAAGTGGTGCAAAAGGCTGGGGAGGGTCGGTGCGCCATGGCCTGGCGCACCAACAACGAGCAGGGTTTCTCCCTCAGGCTCCACAACCACCCAGACCGCACCTTGCGGGATTTTGATGGTATAGTACTGGTAACTGTGCGCAACGCCGAGGCCATGCAGAAGGCAGAAAAGCTAAAACGCATGTCCAAGGCTTTGCGCGGGGATCTTGACAAGCAAACCCCGGACTAGGTCCATAAAAGACACATAACAGGGGGTCAGCGGGGGTTTTTACCGTCTGGGTCATGT # Right flank : GGCGGCCGTTGTAGACTAACCCCCATGGTCTTGGTGCTAGACTTCGGCTCCCAGTACACCCGCCTCATCGCCCGCAGGCTCCGGGAACTGAGGGCCTTCTCCCTCATACTCCCCGGGAATGCGCCTTTGGAGGAAATCCAAAAGCACAAGCCGCAAGCCCTCATCCTTTCGGGGGGGCCGGCCAGCGTCTTTGACCCCCACGCTCCCCGGCCCGACCCTCGGGTGCTGGAACTGGGCCTGCCCATCCTGGGCATCTGCTACGGGATGCAGCTTCTGGCCCAGCTCAAGGGGGGCAAGGTGGAGCGGGCCGGCCGGGCGGAGTACGGCAAGGCCCTCCTCACCCGCCACACCGGCCCCCTCTTCCGCGGCCTCGAGGGCGAGGTCCAGGTCTGGATGAGCCACCAGGACGCGGTCACCGAGCTCCCCCCGGGCTGGCGGGTCTCGGCCGAGACGGAGGAGAACCCGGTGGCGGCCATGGAGGCGGCGGACGGCCGGAGCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86357-85483 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000070.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_4.5_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 86356 36 100.0 36 .................................... CACTGGGGACAGGTTCCCTCCCGCCAGCGAACCCTC 86284 36 100.0 42 .................................... GTTCACCTCCGCGGATAGGGAACCTTATTCCCTATCCAATGT 86206 36 100.0 40 .................................... AGTGCTTCCACGAGGGCCCTCAAATGGGCGGGTACGCGCA 86130 36 100.0 42 .................................... ACACCAATCTGGTGCAGTTTGAGCTGGTGCGCCTCCTCCTCA 86052 36 100.0 36 .................................... ATCTTCAACCCCTCCAGAATGCCTTCCTGGTAGGCA 85980 36 100.0 40 .................................... AGAACATCACTGGGCGCCGTGCCTCCACTGGAAGCGCGTT 85904 36 100.0 44 .................................... CCTGTCCGTCAGGGCCGCAGCATGCCCGTAAGCTGCCAGGGCCT 85824 36 100.0 38 .................................... CCGTTCGGTCCGGCAATGATGATGCTGTCCTCATAGAC 85750 36 100.0 39 .................................... AGAACCTTGAAGACCTTCCTCTTGCTCATCCTTTCCCTT 85675 36 100.0 43 .................................... ACGGCGCCCCTGGCCGCCCAGGTGGAGCTGGGGTTCCTCCCCG 85596 36 100.0 41 .................................... GAGTAGCGAACTCATCTGCGTGCCGTAGCCCACATCGGGGA 85519 36 94.4 0 ...............................A..C. | C [85486] ========== ====== ====== ====== ==================================== ============================================ ================== 12 36 99.5 40 GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Left flank : CCCATATAGACCACGGAGACAGCCATGGGGACCACAATGACT # Right flank : GGAGTGAGGGCGGCTGTCATTGCCCCTTGCTTTGACGGGGATACAGGGGCTTCTGCAGGGCAACCGCCAAAACTAGGACGGGGGTTCGTCCCCCGTCCTGCGTTTTTTGGTCCTAGCCCCCCACCTACACCCGCGCCCAAAGGAGCCTGAGGCTATTCAGGGTCACCAGGACAAGGGCCCCGTTATCGGCCAGGACCGCGGGCCAAAGCCCCGTGAGCCCGAGAAGGGTGGTGAGGAGGAAAAGGCCCTTGAGGCCCACTGCCAAGGCGATGTTCTGCCGCACCACGGCCAGGGTCCTCCGGCTCAGGTAAAAGGCCCTGGGCAGGGCGGCTAGGCTAAGAAGGCCCACGTCGGCGGCCCTCAGGGCGGCCTCGGTGCCCTCGGCCACCGCCAGGCCCACCGTGGCCCGGGCCAGGGCAGGGGCATCGTTCACCCCGTCCCCCACCATGGCCACCCCACCCCGCTCCGCCAGGTCCGCCACCACCTGTAGTTTTTCCACC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 20795-21208 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQWU01000073.1 Thermus igniterrae ATCC 700962 B128DRAFT_scaffold_1.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 20795 36 100.0 38 .................................... TTGTAAGCCACGAGCACCCCAACAGCCTCGGGATTTTC 20869 36 100.0 38 .................................... GGGAGGGGGAGGCCCCTCCCCCCTGGGCTTTGGGGGGT 20943 36 100.0 41 .................................... TACACTACTACAGGCCGTTCACCCGTGCGCTGCAGGGTGTA 21020 36 100.0 40 .................................... TCCATGGTGTAGATGACCGCAGGCCAGCGGTAGGCCAGGG 21096 36 100.0 41 .................................... ATGGCCCGGCGCCGGTCCTTCTGAGCCAGCACTTCGGCTGG 21173 36 91.7 0 .........A.....................T..G. | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 98.6 40 GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Left flank : GGAGGGGATGTGTCCAAACTGGTCCCCCCCGCCACCCTGAGGGCCCTGAAGGCCAAGTTTGGCTAGGCGTTTCCTGGGCTTCGGCCAGAGGGAGCGGCTTTTAGCCCTTTGGCTTAAACTCAGTTATTGCTTCCACTTGTTATAGCTACTTCCCAAATTCGCCATTGCCCGCGGAACAGGCATTTTTGACGCTTTACCAAAGCGAACCAAGGTGGCATAGGGCATTTTTCTGATAAAAATGAACCAAGTATATGCTTCCAGTGATGTGCTATAATGCAGGTGTCCGAACCTTCGGACGGGGAGCTTGACAAGGAGTTTTTGCCTTGGGCAAGGGGAATATGCGCCTTTCCCCTCTCATCGCATCGCCCGCAGGGCTATGAGCATGGGCATAAATCCCGCAAAATGCTCTCTATACGCCATGTGTATATTCCAGGTTTCATCCTTCTCACAAACCCCCCCTCCAAAAACCTTGTCCAGGACGTTGCGGAGGAGGGGGTAGA # Right flank : CCATGGAAACCAAAAACCTTACTGCGAGGGGGCCCGTGCAAATTGCCTCTGCCGGGTAAAATCCTGAGCGGAGGTCAGCATGAAGGCGTTCGCCAGCAAATACGGCAACACCCTGGAGTTTGGTCACCTCATCGGTGGGGAAGAGGTGTACGAGGGCCAGACCCTGGAGCGCCGGAACCCCTCCGACCAGGAGGACCTGGTAGCCCGTTTTCCCGAGGGCACCAAAGACACCCTGCGCAAGGCGGCTTTAAAGGCCCGGGAGGCCTTTGCCGAGTGGTCCCGCACGCCGGCGCCGGTCCGGGGTCAGGTGCTTTTTAACCTGGCCAAAATCCTGGAGCGGGAAAAGCCCACCCTGACCCGCCTCATGGTGCGGGAAGTGGGCAAGACCTTTAAGGAGGCGGGCGGAGACGTTCAGGAGGCCATAGACACCGCCCTTTTCTTTGCCTCCGAAGGGCGCAGGCTTTACGGCCAGACCGTCCCCAGCGAGATGCGGGACAAGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAAGCCTTAGCCCCGTAAGGGGATTGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //