Array 1 109282-107909 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWA01000002.1 Salmonella enterica subsp. enterica serovar Bareilly strain BCW_2890 NODE_2_length_351586_cov_2.3175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109281 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 109220 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 109159 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 109098 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 109037 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 108976 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 108915 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 108854 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 108793 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 108732 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 108671 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 108610 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 108549 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 108488 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 108427 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 108366 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 108305 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 108244 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 108182 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 108121 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 108060 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 107999 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 107938 29 96.6 0 ...............A............. | A [107911] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126529-125404 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWA01000002.1 Salmonella enterica subsp. enterica serovar Bareilly strain BCW_2890 NODE_2_length_351586_cov_2.3175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126528 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 126467 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 126406 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 126345 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 126284 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 126223 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 126162 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 126101 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 126040 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 125979 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 125918 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 125857 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 125796 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 125735 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 125674 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 125613 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 125552 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 125491 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 125431 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //