Array 1 273764-273307 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKKM01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain E6C1 NODE_1_length_714073_cov_22.622424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273763 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 273702 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 273641 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 273580 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 273519 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 273458 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 273397 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 273336 29 96.6 0 A............................ | A [273309] ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 291510-289896 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKKM01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain E6C1 NODE_1_length_714073_cov_22.622424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 291509 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 291448 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 291387 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 291326 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 291265 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 291204 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 291143 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 291082 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 291021 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 290960 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 290899 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 290838 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 290777 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 290716 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 290655 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 290594 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 290533 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 290472 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 290411 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 290350 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 290289 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 290228 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 290167 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 290106 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 290045 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 289984 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 289923 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //