Array 1 26802-25429 **** Predicted by CRISPRDetect 2.4 *** >NZ_VION01000007.1 Vibrio cholerae strain P9-CHT63-05 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 26801 28 100.0 33 ............................ CGAAGTGCGGATTGATATCGCCAAGTGGGATGC 26740 28 100.0 33 ............................ TGCATCATTAAGTGCGTAAAATTTACCAGTCAT 26679 28 100.0 33 ............................ TTTGATTAGTGATTTTATTGAAGTTTGCCAGGA 26618 28 100.0 33 ............................ TACAACTGTTCAATAGAGCAAACGTCTTTATTC 26557 28 100.0 33 ............................ CACCCAGCCACCCTGCTTATTAACGATGGTGCA 26496 28 100.0 33 ............................ GCAATTCGACCTACCTAAAACCCCTCACTTTGT 26435 28 100.0 33 ............................ TTTTAGGTCGGCATCTTCTCTTATGATCATACT 26374 28 100.0 33 ............................ TACTTTATCCTTTAGTAGTTCATACTCAACCTT 26313 28 100.0 33 ............................ TATGACAATCAACGCCCTCAGCGCTTGGTATCC 26252 28 100.0 34 ............................ CCAGACAACCTCAGGCGATCTTGAGGTTAAGCAG 26190 28 100.0 33 ............................ TGCGATAAAAAAGGGGCTATCGAGGTAATTGAT 26129 28 100.0 33 ............................ CACTGCCGCCAAAGAGAGCATTCTGGCTAAAGC 26068 28 100.0 33 ............................ TCTGCACCACTTTCGGTGGCCCACTGGAAGATA 26007 28 100.0 34 ............................ TAGCGCTTCGATTACTTGAGCTTCAGTTAAAGCC 25945 28 100.0 33 ............................ TGCTGATTTGCTGGTTGAGGTGAAGCAGTTGGT 25884 28 100.0 33 ............................ TTTAGAAAGTGGTTTTCTTTGATACTCGCGCGG 25823 28 100.0 33 ............................ TTCACTTGCTTTTGAGTTAGGAATGTTGCTTGC 25762 28 100.0 33 ............................ CTAAGGGCTTGCTGATGTATGCCTCGTTCTGCT 25701 28 100.0 33 ............................ CTTGGCATTCTCTCGCTCATGTTGCTGAGTGAG 25640 28 100.0 33 ............................ TTTGTTAGTAGCAATTTGAGGAATCAGGCGAAC 25579 28 100.0 34 ............................ CAAACCGCCGCTGATCACTTGGCGATTCACCAAA 25517 28 100.0 33 ............................ CGCCGATTATTGATTCTGACCACTTCGCTGGAT 25456 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 23 28 100.0 33 GTCTTCCCCACACAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGCTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : TTTGTGGGTGCAACGTCTGAGTACGCTTGGTTTGTCTTCCCCACGCAGGTTGGATTACAGAGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTATTACAGGGTTATTGGGTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTTAGGCACTTGGATAAACATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTTTTGGGTTGGGTGAAACAGGGCAGGCCTCATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATCGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCCAAACCAGAGGGGATTTGTGACAACAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 358868-358661 **** Predicted by CRISPRDetect 2.4 *** >NZ_VION01000053.1 Vibrio cholerae strain P9-CHT63-05 53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 358867 27 100.0 33 ........................... AGAAATGCGCAACTTAACTATCGCTCAGCCTCT 358807 27 100.0 33 ........................... ATCGCCACTCTATTCCTGCTGCATCGACTGCAT 358747 27 100.0 33 ........................... AAGACGAGAAAGCCTGTCTATCTGTTCAATGAT 358687 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================= ================== 4 27 100.0 33 GTGTTCTGCCGAATAGGCAGCCAAGAA # Left flank : CATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGCAGAAGTGAGGTTTGTTCGTAATCAAACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATCAAACGCAGTATGGCTAGGGCCGAGTTATTTGGTATTCAACAATCATTACCAGTAACGAATGAAGACCGTGTCATCGATAGTTTTCATCAGATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACCAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCCTTTTGACGAAGACTCTTTTTTAGTTCATTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAATGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTATA # Right flank : TAGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCCATTTAAGAACTGCAACGCACTTTTGCCCCTTTCCTGCTTAGTGCGATGACTCAGCAATAGATTACTCTGCTGAGTTTGCTATACGTGAGGTTATGGCAGATACCAGAACGCTGTTACATGGAATCTCCCATTTTCGAACATCACACCGTCTATGCTTAGTAGCCTTACTTTTGCATAACAATTCGCTTAGCTAATCACCTACTCTAAAAGAAGTGGTTCAGACAAAGCCTTTCATAGAAATTGTTCTTCAGCTTATGTGCTTTTATCTAAATTTGCTTGGCACTGTAAGTGTTTAATAAACATCGGAATCTTTTTCGCCAAGTGCTTTCTGGAAGAATAAAAAGCATACAGTACTAAATCATCAGGCTCATAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //