Array 1 39084-37991 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZPX01000001.1 Sulfurimonas crateris strain SN118 NODE_1_length_493828_cov_32.826047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 39083 36 100.0 30 .................................... CAACTTTTTTGGATAAGTCGCCAATGTCCT 39017 36 100.0 31 .................................... ACCAAGCAGGCATTAAAAACTGCTGTTGCTA 38950 36 100.0 30 .................................... TTCGCTTAGTTTTGTGTTGTTTTGAAATAT 38884 36 100.0 30 .................................... CGATGGAGTGTTATTGTACTCTGCCCACCA 38818 36 100.0 30 .................................... TGATAAGATTAAAGAGCAAGCGTCTTGTTA 38752 36 100.0 30 .................................... TGTAAAAATGGCATTGACATATAGATTACT 38686 36 100.0 30 .................................... GAGCTTAAAGCTTGATGCTGCTCCAATCGG 38620 36 100.0 30 .................................... TTAAGAGAACAGCAGAATGCGATAAGAGAA 38554 36 100.0 30 .................................... GGGATCGGTGCAGACCATCCACCCCATGTC 38488 36 100.0 30 .................................... TCTTATTTGATGCGGTGCTAAATGGAATTA 38422 36 100.0 30 .................................... CGAACAAAGAACGCAATGCTAAGATAAATG 38356 36 100.0 30 .................................... AGTACCAAAAGAAATGAGATACATCCACAA 38290 36 100.0 30 .................................... GGTCTTATCATCGCCAAATTCGTCGAGCTT 38224 36 100.0 30 .................................... TGAGGGTGTTTCTTCGTCTGCTTATGGCGA 38158 36 100.0 30 .................................... GAATTGTTCAAGTTACGCGTGCGAGGACCC 38092 36 100.0 30 .................................... GCGGAGTTTTGTTTCCAATATCCACCCGTA 38026 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 100.0 30 GTTTTAAGACCCCTGCAAACCCCTTTGTGCTAAAAT # Left flank : GGCGGATACTATATGCTAAAGAGTGAGCAAATAAGTAGATCTTTAAAAATTAAAGAGCAGTTTTTTGAGATAATAGAGCAATCAAAAAATCCTATAGTTGTCACTAACCCAAACGAGTATGACAACCCAATAATTTATGTAAACGAGGCGTTTTGTGAGCTGTTTGGGTATGAGTATGAAGAAGCGGTAGGTCAAAACTGCCGCTTTTTACACGGCAACGACACGAAACAAGAAGCTCTTAAGCAGATAAGAGAAGCCCTGAGTGCGCAAAAGCCCGTAGAGGTAAATATATGTAACTATACCAAAGAGGGAAATATGGTTTATGAAGATCTTACGATCAGCCCTATTTTTGATAAACAAAAAGAGCAGCTTAGCTACTTTTTAGGCATATACAAAGATATTAGATCGGTACCGCTGTTTTTGGAACAAGTTCAAAAAGTTCTTTAGGAGAGTTTTTATTTTACTAAAACATCTGTCAGTTACAGAGTCATAGAGAAACT # Right flank : AGGGTTTTATGCAGCCCTGTATAGCATGGCAAAAGAGAAGGTTTTGTATATGAAAATTTGACTTTTTGTCTTGTTTTTAAGTACAATATCTACGTTTTAGCACAAAGGGGTTTGTGTAGCGGGACTTAAAATAATTGATTCGATTTAAATCGATGATAGATTTTGAATGTTTCAAAACAACAATAGTTGTTTTGGTGCATTTTTTTCATTTTCTTCTTGTATACCTACTATTATATCCATGCTTCCAAACTGTTTATCTGTAAACATTATCATCCGTATACTTCCTTTTGCTATGTTTGAAGCTATAAAATCTTTTATTCTTTTTTTCCCGCTTAAAGCTGATTCTTGAGAATGAAATGAGCGGATATAGATAGAAAACTGCATCATTATATAGCCCTCTTTTAAAAGCTTTCCTCGCAGGTATCTATACTTTTTTCTTGCTTTTTTTGTATCGGTCGGCATATCAAACATTATCATAAGCCACATAAATCTATAAGCAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAGACCCCTGCAAACCCCTTTGTGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 252062-253626 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZPX01000003.1 Sulfurimonas crateris strain SN118 NODE_3_length_271542_cov_28.246357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 252062 36 100.0 28 .................................... AACACAAAGATTTTCCGGGGATTGATTT 252126 36 100.0 26 .................................... TAACTAATTCTTTCAGGTCGCTCAAC 252188 36 100.0 28 .................................... TTACAATTCTGGTTGAATCTTTCCTCGT 252252 36 100.0 27 .................................... CTTTGAGTAAATGCGCTCAACACGTTA 252315 36 100.0 26 .................................... TGCTAGGCAACTAAGCTAAACTATTC 252377 36 100.0 28 .................................... AAGATGTTTAAGCGCCGACCCCTCGAAC 252441 36 100.0 27 .................................... GTATAGCTCTCGCATTTAGGGCTTTCA 252504 36 100.0 29 .................................... CTGATTGTCTCGCCTGAAACCGCGTCATC 252569 36 100.0 26 .................................... TTATGGCGGTCTGGGTTTGTGATGTC 252631 36 100.0 28 .................................... TGATTGTCTCGCCTGAAACCGCGTCATC 252695 36 100.0 27 .................................... ACGCTTCATTGCAGTAATAGCCGCTTC 252758 36 100.0 31 .................................... TTCTCATTCGCCGTACCTGCGACATTTGTAT 252825 36 100.0 28 .................................... GATGGCGTGAGAGTGGTTGTATCTCCCT 252889 36 100.0 28 .................................... TTAAAGACTTTTGGACAGGGGAATTAAA 252953 36 100.0 28 .................................... TTATTGATCATATAAACCCAGCTAACGC 253017 36 100.0 26 .................................... CGACAATCAGCTGCCAAAAACAGCAC 253079 36 100.0 28 .................................... GACGGATATAATAAAATAGGTAACACGG 253143 36 100.0 29 .................................... CTAGAACTTAACGAATTGATGCTTAAGTC 253208 36 100.0 28 .................................... ATTTGACGTGTAATTGCAAACTTATTAG 253272 36 100.0 27 .................................... AGATGACACCTGCTTTTTTTATAGAAA 253335 36 100.0 28 .................................... ATTGAGATCCCAGGCCCCTGAACTTGCG 253399 36 100.0 29 .................................... AAATAGTAGCGAAGTACGCACCGAGTGAA 253464 36 100.0 27 .................................... GCAAAGATGAAGATTCAGGTGATAACA 253527 36 100.0 28 .................................... CTAAAATCCTTTAGCTGTTTTTTTAGGC 253591 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 28 ATCTACAACAGTAGAAATTTGGTGGTACCTTTAGAC # Left flank : TTAAAAGAGGAGTTTAGCAAAGTATTTTACACTCTTGGGTACGCCTTTGCGCCTATATTTATTATAGGCGGGCTCTCGCACACATACGAGTTTTTCTTTCTTCATCACTACAGCGATATAGCAAACGGCTTTATACAGGGGTTTGTTATCTCTGCTGACGAGGTAATGCCGCTTGCTGCGAGACAAGACCCTTGGCTCAGAATATTTGGCGTTATGAATTACATAGCAATCATATGGGCATTTGTCATAATGGCAAAAAGGGTTAATTTTTTCACCGCATCAAAAACTGCTAAAGCGTTGGCTTTTGTATTTGCATCAAGCCTGATTATATTTTACCTATGGCTAAATGTTTACAAAGTTTACGCGTTTAAGACTTACGGCGCAAAAAAACACTCTCATGCTTATGTGGTTAAAACTCATAACTAGCGAGAAAAAGAAAAAATCTTTGAAAACTTCTTTGTTTACTTAAATATCTTTATCAAATTATAATAAGTTTATAA # Right flank : CAGATAAACTGCCATTTTGGTTACCGTAGGTAGCATTTTACCCTATTTTTAGCCACAAAATAGATGAAAAAGTAGCAAAAATCGAATAAAAATCTCATAAAGACTAAGGTTTGCATCTTAGTCGATGATTATGAGATCTTCCTCATCATTTTTTGCATAGCCATATCTCGTTATTTTACACTGTTCACTGAGATTAAAGATAATGACGCTATCAGTTTGACCAAAACGTTTTTCAAATTTATTTTTTATTTCAGAAGAGACAAGTGACAAAATTCTTTTGCTGTTTCGGATTTGAAATATCGAATACTGCAAACGAAAACCATATTTTAAAAGAAATTTTGAAAATCTTGTACGGAGCTTGTCATCACTAATGTCATACGAAACTATTATCATGGTATTTTTCCCAAAAACATAGGGTAAGCTCCAATAGTTTTTTCTTGTATAAATGCGCGATAATACTGCTGTATATATAGAAACATCTCGTTTTTATACTCTAGTAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTTGGTGGTACCTTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //