Array 1 210440-209007 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDG01000003.1 Riemerella anatipestifer strain RCAD0142 ZB100002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 210439 47 100.0 30 ............................................... GCGGAACGCGAGCGGCTGCTGCGGGCACGG 210362 47 100.0 30 ............................................... AAAAGCTACCGCATTAGGGGACAGCCCTTA 210285 47 100.0 30 ............................................... AACAGTACCATAAAACGCCAGCTTTTCAGA 210208 47 100.0 30 ............................................... ATCACTCGCTACATTAAGGAGTTCTCCCAT 210131 47 100.0 30 ............................................... ACTTCGTACCACTCCATGTTTTCTGTGATA 210054 47 100.0 30 ............................................... GCTAAAGCAATACGAAAAATTTTCAAAGCA 209977 47 100.0 30 ............................................... TTGTACTTTATATATGATACCATTTCTTCT 209900 47 100.0 30 ............................................... AAAGAGAAAGTCGTGGAGACCACGAATGAG 209823 47 100.0 30 ............................................... ACCTGATAGTATTTGTAAAATCCTGCACAC 209746 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 209669 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 209592 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 209515 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 209438 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 209361 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 209284 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 209207 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 209130 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 209053 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 98.5 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 208617-206319 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDG01000004.1 Riemerella anatipestifer strain RCAD0142 ZB100003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 208616 36 91.7 30 .................G.....TG........... ACTAGTAAAATAATAACGATATGAGAAATT 208550 35 83.3 80 ...................-..CT....T..A...A CTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT T [208525] 208434 35 83.3 79 .......G...........-..TT....T..A.... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC G,C [208401,208410] 208318 35 83.3 79 ...................T.T.-..T.T..A.... TCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT G,CG [208284,208298] 208201 35 83.3 79 .......G...........-..TT....T..A.... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC G,C [208168,208177] 208085 35 83.3 79 ...................T.T.-..T.T..A.... TCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT G,CG [208051,208065] 207968 35 83.3 79 .......G...........-..TT....T..A.... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC G,C [207935,207944] 207852 35 83.3 79 ...................T.T.-..T.T..A.... TCCGCTGAAAATATAACGAAGCTGTGAGTAAAATGAGAGTAGTCCCAACAGACCTAGCAGATGACGGTAAACTAAACGG G,CG [207818,207832] 207735 35 83.3 82 .......G...........-..TT....T..A.... TCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT G,C [207702,207711] 207616 35 83.3 81 .....T.............-..CT....T..A.... TCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAA G,C [207583,207592] 207498 35 86.1 81 ...................-..TT....T..A.... TCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA G,T [207465,207474] 207380 35 83.3 80 .......G...........-..TT....T..A.... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC G,C [207347,207356] 207263 35 86.1 80 ...................-..CT....T..A.... TCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT G,T [207230,207239] 207146 36 97.2 30 ...................G................ ATAGCAGTAGAACCATCAAACGCTGTGGCT 207080 36 97.2 30 ...................G................ CGGCAACAAAAGAAGGAGAAGAACAAAGCA 207014 36 97.2 30 ...................G................ AGCAACATATACGAAAATCCAGAAATCTTA 206948 36 97.2 30 ...................G................ TGTGCTTCCTACAACGAGTAGCGTTCCTTT 206882 36 97.2 30 ...................G................ TTAACTAAGTTACCTAGAAGTATAAATGAA 206816 36 100.0 30 .................................... GAGTGTTATTAACGACAGTGTTGTTGTGAA 206750 36 100.0 30 .................................... TCTGCATCTACGAAGGTGATGAGGAAAAGG 206684 36 100.0 30 .................................... CAATAGGACCTATTATATTTACAACAACAG 206618 36 100.0 30 .................................... ATTTTGAAAATATAGAGGCGATAAGCCTTT 206552 36 100.0 30 .................................... ATTCTAAAAGGTACAGAGAATGAAGCTAAA 206486 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 206420 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 206354 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 26 36 91.3 54 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : CATTAAAATAGATGGGGACAACCCTAAAAACGGTATTGTCTTTAAAAACTTAGACACTCAGCAAGAAGTGAAACTCTCAGCAGAGCATATTGTCCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCGGGTAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGAACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGCACTTCTAAATAAAGACCGCCCTTCCTTAATGCTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGACACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGCCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATAAATAGGAAGCAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTATGCCCTTAGGT # Right flank : TTAGGAGCAAATAAGCTGTATTTATTGGTGTTGTGAATACCCTTCAAATGCTGTGCATTATTGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTA # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-1.59, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-77] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //