Array 1 21942-21428 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFET01000127.1 Klebsiella pneumoniae strain TUM14685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21941 29 100.0 32 ............................. CTCGGATAAAATGCCTTGCATGAGGCGAACGA 21880 29 100.0 32 ............................. GCGTCCAGTTGAACCCGGCACATTCCCGCTGG 21819 29 100.0 32 ............................. TACGCAGCCGGATCCAGGAGCGCATGGACGCT 21758 29 100.0 32 ............................. GCACGATATTCAGCATCATCAGGACGGTTCAT 21697 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 21636 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 21575 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 21514 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 21456 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGTTTGCAATATCTGCCTGCGCCGCCGCCAACG # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1067 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFET01000456.1 Klebsiella pneumoniae strain TUM14685, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 28 96.6 32 -............................ TGCGGGCCACCAGGGTTGCAGGGTATCAATGG 61 29 100.0 32 ............................. GCCCAGATCGGCTTTTCATCCCGAAGCCGGGC 122 29 100.0 32 ............................. GACACCCGCACGCGCCGGGCAGGCGTGGAACT 183 29 100.0 32 ............................. TCGTCGGGTTTATTGAGTATTCCGCCTGATTT 244 29 100.0 32 ............................. CAGGTCAGCGCAATGTTCCGGGATATCGAGGA 305 29 100.0 32 ............................. ATGACAAAACCAAAATTGAGTTTTGGCTGCAG 366 29 100.0 32 ............................. TTGTCCACTTCACGCCAGTAGTCTTTAGAGAT 427 29 100.0 32 ............................. AATGGAGGTCCGGTTACTGCTGGAAATGTTTA 488 29 100.0 33 ............................. ATCCCCACCACCGGCGCTGGCGAGTAGTACCGC 550 29 100.0 32 ............................. GATTGTCTGACAGATAATGCAGCGCAATGCGC 611 29 100.0 32 ............................. ATGTGAATTTCCTGGCCGGTTGGTAGTTTGAA 672 29 100.0 32 ............................. TACTGAAACGGGTAATCAGCACAAATACCAAA 733 29 100.0 32 ............................. CATCGCTTTATGCCGAAATGAGGATGATAGTG 794 29 100.0 33 ............................. GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC 856 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 917 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 978 29 100.0 32 ............................. ATTTTTTGGGGCACAATTTGGGGCATTTTTTT 1039 29 96.6 0 A............................ | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //