Array 1 2173-1147 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACWIR010000002.1 Streptococcus agalactiae strain 1169 NODE_2_length_154701_cov_20.287, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      2172	    36	 100.0	    30	....................................	TTTAAAGAGATATCTGTTTCATCTTGAGGA	
      2106	    36	 100.0	    30	....................................	TTGAGTAGCTTTTTTACTAATTGTTGTCCT	
      2040	    36	 100.0	    30	....................................	GTAAAAAATCAATCTACATCAATGGAGCAT	
      1974	    36	 100.0	    30	....................................	ATAAAATACTGTAAAATCGTAATCGACATA	
      1908	    36	 100.0	    30	....................................	ACGAGAGTTAGAGAACTCTAAAACTGTAAG	
      1842	    36	 100.0	    30	....................................	ATTATCTATTATTTTAAATTTGATAAAACA	
      1776	    36	 100.0	    30	....................................	AGACGGTTTTGATCCTGTTTGATTTACATT	
      1710	    36	 100.0	    30	....................................	ATGCTTGTCAAAGGTAATAAATCTGGAGAT	
      1644	    36	 100.0	    30	....................................	CGTACCATCTATCAATTTACCGCAAGCTGT	
      1578	    36	 100.0	    30	....................................	CCGATTATTTCCTACATAATACGCACGTTT	
      1512	    36	 100.0	    30	....................................	AACTGTGTGATACTTTTCGTTTTTTTCTTT	
      1446	    36	 100.0	    30	....................................	TTTTATAAGTGATAGAGTGTGCAACACCGT	
      1380	    36	 100.0	    30	....................................	TTAAAAGATTTAAACTATCAAGCGTCAATT	
      1314	    36	 100.0	    30	....................................	TTCTAAATGCTGGTGACTGCTTTGCATAAA	
      1248	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT	
      1182	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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