Array 1 10-761 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSY01000047.1 Acinetobacter baumannii Naval-21 deg7180000005429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 10 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 70 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 130 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 191 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 251 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 311 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 371 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 431 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 491 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 551 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 611 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 671 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 732 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 13 30 96.9 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TATCCAACAG # Right flank : TTG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26910-23039 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSY01000003.1 Acinetobacter baumannii Naval-21 ctg7180000005516, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 26909 30 96.7 30 ............................A. TTCCGCAACTCGCTACTTCCCTGATGCAGA 26849 30 96.7 30 .............................G GAAGATTTGCTTATGGCGTTCTGGAAAGAA 26789 30 96.7 30 ............................A. TGCTTAGTAATGCGCAAAAACGGTCATCCA 26729 30 93.3 30 ............................AG CAGAAGAACGCAGAAAAGCGAGAAGCTTAA 26669 30 96.7 30 ............................A. CTTGAAAGGCTTGAGCTTAAAGCTTTTTAC 26609 30 96.7 30 .............................A CAGCTGGCCGCGTATATAACGGCTCAGTAT 26549 30 93.3 30 ............................AC AACTCGATGTTGGGTATGCAGAGAGCCTTG 26489 30 93.3 30 ............................AA ACTTACACTTCTCAGCGTCAAACCATGCGT 26429 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 26369 30 96.7 30 .............................G GCAGAACTTTTCATGACGCTCATTCTCTAA 26309 30 96.7 30 ............................A. ACCTATCAACGTTAAACCAACGATTGCCAG 26249 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 26189 30 96.7 30 ............................A. TGGGATGTTATGAATATTCGACATTACCAA 26129 30 96.7 30 ............................A. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 26069 30 100.0 30 .............................. CAAACGCTTCAACCAGCCACGTCTTTGAAG 26009 30 96.7 30 .............................C TTCCGCCAAATTCTAGGAGGTTAACATGCT 25949 30 100.0 30 .............................. GTGCATACTTATTGCCGCCAGCAAGTAAAC 25889 30 96.7 30 .............................C CTTCGGGAGGTTTTCTTTTGGGGTGATCAT 25829 30 93.3 30 ............................AA GTTTCGGCCTAATGGATGCGGTCTTGAAAA 25769 30 93.3 30 ............................AA GGACTATCCGTCCCTTTGCCGTTTTTGTAC 25709 30 93.3 30 ............................AC CCTCGGGTGGTTTTTTATTGAGGTGATCAT 25649 30 93.3 30 ............................AG TGGCGCGTTCAAGCGTGCCATTGAAGCATA 25589 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 25529 30 96.7 30 ............................A. CCGCCGATAAAACCCTTACCCGATACGCCC 25469 30 96.7 30 .............................C AGCTCCCGATTCAACATCCAACAACATGCT 25409 30 100.0 30 .............................. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 25349 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 25289 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 25229 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 25169 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 25109 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 25049 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 24989 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 24929 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 24869 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 24809 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 24749 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 24689 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 24629 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 24569 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 24509 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 24449 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 24389 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 24329 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 24269 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 24209 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 24149 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 24089 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 24029 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 23969 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 23909 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 23849 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 23789 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 23729 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 23669 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 23609 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 23548 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 23488 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 23428 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 23368 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 23308 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 23248 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 23188 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 23128 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 23068 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 65 30 95.3 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //