Array 1 20374-15547 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRU01000003.1 Porphyromonas gingivalis strain KCOM 2797 JS2_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20373 30 96.7 33 A............................. CCTAAGCGGTTCAGGTGTTCTACACGAGCGCTA 20310 30 100.0 35 .............................. CCCCAGCACTCAACCCTTTGCCTGCCCCGCCGCGC 20245 30 100.0 36 .............................. CGTGTGCCCAAGCTCGAGAAGGCTGTGGCCCCAGTA 20179 30 100.0 36 .............................. TGACGCCCGCGGTGGCAAAGAGCCTCCTCGCATTGC 20113 30 100.0 36 .............................. GCCGGATCCGCGCAGGAGCTGTTTAGCAATGTGCCG 20047 30 100.0 37 .............................. AGAATACTGCATTCGAATCTCGCGAGTCGCATTGTTT 19980 30 100.0 37 .............................. AGAATACTGCATTCGAATCTCGCGAGTCGCATTGTTT 19913 30 100.0 37 .............................. CTGACCGCTAACCCCAACCCGCGCCGTTACAAGGCCC 19846 30 100.0 36 .............................. TCTAACCGTAAAACCAAAGACGCGGATGCGTCTCTC 19780 30 100.0 37 .............................. CCGAGGAGGCAGGTAGCTTTGTAGTCGTTCTTCGTCG 19713 30 100.0 36 .............................. GTCTCCGTCGCGTTCGTCCGCATTTATTATATCGAG 19647 30 100.0 35 .............................. TGTGGGGTTCTTGGGGAAGCTGGCAGGAGGTATCC 19582 30 100.0 36 .............................. CTCCCACATATTCTTATATCTTGTTGCCTCTATTCT 19516 30 100.0 36 .............................. CGCCTCTTGTCGAAACGAATGTTGCAATAATAGACA 19450 30 100.0 36 .............................. ACTTTGTCAAGATATCCCAGACTTGTTCAAAAGAAT 19384 30 100.0 36 .............................. TTTCAAAGGATGATATAGAAAGAGAGAAAGAAACTA 19318 30 100.0 36 .............................. ACCACCAGCCAGGGATAATCAAGGAAATATAATATA 19252 30 100.0 35 .............................. CCTATTGGTGCTGCTTCTTGGAGTCTATTTGACGT 19187 30 100.0 36 .............................. ACCACCAGCCAGGGATAATCAAGGAAATATAATATA 19121 30 100.0 36 .............................. TGGCAATGATTGCTAAATCCTTCCTATTTCGAAGGA 19055 30 100.0 35 .............................. TAACCTCGGTCCTGATATTCTGGATTTCGATGTTA 18990 30 100.0 36 .............................. TAAAGTCGGAATAACTTCTAGGACTGCATTTGTAGT 18924 30 100.0 36 .............................. GCCGTTGCGATTTAAGCAGCGATATATAGAAATATA 18858 30 100.0 37 .............................. CGAGAAGTCTGTGCAGGGCAGCGGGAAGACGGTGAAA 18791 30 100.0 36 .............................. AGACAAGATTATGAATGAAGTTTATATAAAAGCACA 18725 30 100.0 36 .............................. CGCAGCTGACAAGGGGTGGAAGCCCCTGAAATCCGT 18659 30 100.0 35 .............................. AGAACTATGAATTTAAAAGGAATTGATTTTAATAA 18594 30 100.0 35 .............................. AGAACTATGAATTTAAAAGGAATTGATTTTAATAA 18529 30 100.0 36 .............................. CTAAGTCGGGCGGTGATGTGAATATGGAGTTTATAC 18463 30 100.0 36 .............................. GGGAAGTAAGCCCCTCCATCCTCGACCGTATGGCCA 18397 30 100.0 34 .............................. GCAGAGTTCCCGAATTTAAAGACCAGGGTTCTAA 18333 30 100.0 36 .............................. CGGTTCTGCAAAAGCTCGGTTCCGCCCTTTTAGAGC 18267 30 100.0 34 .............................. AATCGCCTGTACGTCCGCCATCGCCTGCTCGAAT 18203 30 100.0 37 .............................. TGCTATTTTATCCCCCAAATATGGCTTAAAGAACTCA 18136 30 100.0 34 .............................. CTGAACAACTAGGCCCATCAGTATTTTATATTGT 18072 30 100.0 37 .............................. TTAAATATACATACCTCCAAAAAGTATGGGTTAAAGA 18005 30 100.0 35 .............................. AAGAAAGGAGAGAAGAGTTAATTCGCGAAGCAGAG 17940 30 100.0 35 .............................. AGAGAGGCCAAAACTTAGTCGACACATACTTTACT 17875 30 100.0 36 .............................. CGTCGAAGATGATGATTTCGACATCTGCTGCATGCA 17809 30 100.0 35 .............................. GATGAGTGTATAATCTATTGTTGTACAGTTACTTA 17744 30 100.0 36 .............................. AACAGGAGTATAGTCCTCAAGGTAAGACACAATCAT 17678 30 100.0 38 .............................. TTGAAGCAACGCTTTCGCATCGTTCACGAACTCAACTT 17610 30 100.0 37 .............................. TGTCGAATCCTTTGAAGTTAGTTGTTTCAGACAAAAA 17543 30 100.0 36 .............................. GTAGTTTTCCAATATCTACGCTTGTCTTCTGACAAT 17477 30 100.0 36 .............................. GAGACTTGTACCTCGCAAGGCATTCTTCACTGTGCC 17411 30 100.0 36 .............................. CCACGTTGGCCGCCTCCTTTTTCGCTTTCCGCCAGT 17345 30 100.0 34 .............................. TATCGACACAGCATATCAAAAGCCGAATGGCCCG 17281 30 100.0 34 .............................. AATATCTATCAACTTGAAGAATTTAACGTAATCG 17217 30 100.0 36 .............................. GGAAAAGGGCCTTCTATGAGCATTAAAAGACCCAAC 17151 30 100.0 37 .............................. GCCTTTGCCAAAAACCTAGTAACTAAAAATCAAACAG 17084 30 100.0 35 .............................. AAATTCCTCCATAGATTCAAGTTAGTTTCGTTGAG 17019 30 100.0 35 .............................. TGCCAACACCTATACAACAATCAGAGCTCTATCTG 16954 30 100.0 34 .............................. GAGAATACAGGCATTATTTATTTCAGATTTAATT 16890 30 100.0 35 .............................. AGAATTCTATAAGAGTCATAAGTAACAAGAATCTT 16825 30 100.0 36 .............................. GCTCCCCTTGTCCAGAAATCTTGCTAAAAGATCCTA 16759 30 100.0 36 .............................. GGTCTGGATAGAACAGGTTATTGAAATCAAATACAA 16693 30 100.0 35 .............................. CCTCATGCCACGGCTGGTTTTAAATCAATTTGGGA 16628 30 100.0 35 .............................. AGTTAAAGTGTCCCCTATCATTTATTTGTTTAGAT 16563 30 100.0 36 .............................. CGATGCAACCCTCACAGTTAACCCTTATCGTCAATC 16497 30 100.0 36 .............................. CCCTAAGCATTATCTGCATGATTGTTAGTGTTGTTG 16431 30 100.0 36 .............................. TTAGGCGTTCATATATGTTGAGACATCCTCTTTGTG 16365 30 100.0 36 .............................. AAAGTCTCCATATTCGTCTTCTACGTAGATTGCCTT 16299 30 100.0 36 .............................. GCCAGCGATTAGGTACCGAGTAGGTGGCGGTTTCCG 16233 30 100.0 35 .............................. AGAATTCTATAAGAGTCATAAGTAACAAGAATCTT 16168 30 100.0 36 .............................. GCTCCCCTTGTCCAGAAATCTTGCTAAAAGATCCTA 16102 30 100.0 36 .............................. GGTCTGGATAGAACAGGTTATTGAAATCAAATACAA 16036 30 100.0 35 .............................. CCTCATGCCACGGCTGGTTTTAAATCAATTTGGGA 15971 30 100.0 35 .............................. AGTTAAAGTGTCCCCTATCATTTATTTGTTTAGAT 15906 30 100.0 36 .............................. CGATGCAACCCTCACAGTTAACCCTTATCGTCAATC 15840 30 100.0 36 .............................. CCCTAAGCATTATCTGCATGATTGTTAGTGTTGTTG 15774 30 100.0 36 .............................. TTAGGCGTTCATATATGTTGAGACATCCTCTTTGTG 15708 30 100.0 36 .............................. AAAGTCTCCATATTCGTCTTCTACGTAGATTGCCTT 15642 30 100.0 36 .............................. GCCAGCGATTAGGTACCGAGTAGGTGGCGGTTTCCG 15576 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 74 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TCGGGAGATACCTCTTCCATCTTCAGCCCCAAGAATCGGGAAAAGGTGATCGAATCATTGATGCGCTCCTCCGGAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGTGCACCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCGTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTTGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAGGCAAGATATACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATAACAAAAGGCTTGATGAATTTGCTCGAATCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCTGGCTGCTCTACTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAGCATTTTGCCAACACGCTTTTCCCCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 54760-54204 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRU01000003.1 Porphyromonas gingivalis strain KCOM 2797 JS2_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 54759 37 100.0 38 ..................................... CTCATAAGAAAGCGAATATCGCCACTTCGGTATTTGAG 54684 37 100.0 36 ..................................... TCTAAAAAGAGAAGCAAAACAGAACCAAGGAATCGA 54611 37 100.0 37 ..................................... CCTATAAAGGCAAGAAGATAGCCATAGACATGATTAA 54537 37 100.0 36 ..................................... CGCGCTTTTTGCAGGGAGTTGGTTTAGTAAGAACCC 54464 37 100.0 37 ..................................... TACAACAAATCTTGAAAGATTTAATACGTCAAAATCT 54390 37 100.0 38 ..................................... GCGTACTGTGGCATATGGGCCATGTGGTGGAATCACAC 54315 37 100.0 38 ..................................... CACCCGCCAAGCAGACTGCATAGGGCGGAAGGTGAGCT 54240 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 37 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : ACGAGCCTGTCCCCCCGAAAACGACCGAACTTTCCTTTTCGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGCGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAATGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCTTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGATGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATACGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCATTCGTTCTAACCCTCGGTAATCAGT # Right flank : TACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTACAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATGAGATTTCCTGATTTTCCGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTGGATTTTCGAAAAATAGAGAAAGACACCGTTTGATAATCAAACACTTACAAATAGCGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATGTGAGGTTCGATTTTTTTCGAAAAACTAAACCACAATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 41405-42297 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRU01000007.1 Porphyromonas gingivalis strain KCOM 2797 JS2_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41405 36 100.0 30 .................................... TGATTCTATGTAATTAAGACTTTTATCATG 41471 36 100.0 30 .................................... AGAGAATCTATCATAGAAACTGGCTATTTT 41537 36 100.0 30 .................................... AGAGAATCTATCATAGAAACTGGCTATTTT 41603 36 100.0 30 .................................... AGAGAATCTATCATAGAAACTGGCTATTTT 41669 36 100.0 30 .................................... AGAGAATCTATCATAGAAACTGGCTATTTT 41735 36 100.0 30 .................................... TAACTGGTTCGAGGAGTACGAGCGTAATAT 41801 36 100.0 30 .................................... TGGTTGTTGTCATTTCGTCTTTTGCCCAGT 41867 36 100.0 30 .................................... TCTTTAACGGTCGCACCTTCAAAAATTAGT 41933 36 97.2 30 ............T....................... CAGACCACTTTCTGCTTTTTGAGGAATTTG 41999 36 100.0 30 .................................... TCCGCGCGGTAGCGGTGCTTTGGAGACCTT 42065 36 97.2 30 ...................T................ ATAGGAAATTGCATAGATTTTTATAGCACC 42131 36 97.2 30 ...................T................ ATATGGACACAATATGCTACTCTCTTTGTT 42197 36 97.2 29 ...................T................ CTATACGGAAGTAAATCCGTTAAGGACTT 42262 36 97.2 0 ...................T................ | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.0 30 GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Left flank : AGCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCCTGTCCGAACTGACGGACGAATTTTATAAGAATGGGAACGGTATTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGGAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGCAGAACTCGGATGAGAGGGTTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCCGTATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAAAAGCGAACGTTGAACTTTTGAGCGCGAACCGGCAGGAGCACAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACCGTAGAGAGTCATTTTTTCAATCCTAATATCCCACTAAAATGATGATGACAGACTGTTTTTCGCCGGTTTGCAATGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATTATGACTTCTCAATTGGTTTCAAATTCGATGGGGGTA # Right flank : CATGATTCTTGATTGGTGGCTTGGGCGTTGGAATGTAGAGGGAGGGTGTAGTGTGGGGATTCTTCCGCGTTGGGGCTTTTTCACTACATTTGCGGGCGAACGAGGTGCTCCCTTCTTCAGCGAATTTGTATCGGGGAGTGCTTTCCCTTTCTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATCCCTCTCTTCCCTGCATTCTTATTCGGCCGGTTTCGTTCGGCTTGTGTGGTTTATGCCGGCGTTGCGTATGGCTGATGCAAACCTGCTGTATGAGCGGTAGAGCCTGAGAGTCGTTTCGTACCCCTTCGAAATAGATGAGGCACCCACCGAGTTCCTGCACGAACTTGGTGGGTGCCTCTTTATTTATACCTCCCCTAAAGGCCTTTCGAGTTGCCCGATTTATATCAAATCGGCTTGCAATCTATATATTTATCGCAATCGATTTATATATAAATCAAAAACGATTTGTATACAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Alternate repeat : GTTGGATCTACCCTCTATTTGAAGGGTACACACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //