Array 1 524-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRYB01000057.1 Psychrobacter sp. Rd 27.2 Contig57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 523 32 100.0 34 ................................ CCGTTGATGACAGCGATGTTGGCAAGGCTGAGAT 457 32 100.0 35 ................................ ACGGCTAGACATACGTTTTTTATTATTTGTTTGCA 390 32 100.0 33 ................................ CGCTCTGTAGTTACCGTTTGACAGACCTTTGAG 325 32 100.0 33 ................................ AATTATCGCTTGGTTGCCAGCGGTCTTTAGATC 260 32 100.0 34 ................................ TTGGGCACTCTGTAATTATCGTTACACAATAATT 194 32 100.0 33 ................................ CTGACATCATTTACCACACTCAAAACATACTTG 129 32 100.0 34 ................................ CTGACAGCCTCAACCCGCTCTGTCAGTGCATACA 63 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 100.0 34 TTCGCACCCATCACGGGTGCGTGGATTGAAAC # Left flank : CGGGTGCGTGGATTGAAACCCGATAAGCTAAACCCTGCTACTCACTGTCAC # Right flank : CTATCTGGCACTAGATATTGAGCTTCGACGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCACCCATCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 256998-260506 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRYB01000003.1 Psychrobacter sp. Rd 27.2 Contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 256998 29 100.0 32 ............................. TAATCAAGCTGCTCGGGTGTCATCTTGAATTT 257059 29 100.0 32 ............................. GCTTAATTATGTACGTCTGCCAAACTGTTGAA 257120 29 100.0 32 ............................. ATTAGTTTGACCAAAACAACTATTTGTTTCGA 257181 29 100.0 32 ............................. TTGGCACAGCTGACCAAATCAGCAGGCTATCA 257242 29 100.0 32 ............................. GTTTATTTTTACCAGCGATTTGAGCGTTAAGA 257303 29 100.0 32 ............................. ACTCAACTTTAATGGCTGGTATGCGTGGCAAA 257364 29 100.0 32 ............................. CATAATAAAAAACTGATTGCTGATAATAATTT 257425 29 100.0 32 ............................. CAGTTAGCATTTCAGCAGGGTCTAAAATATCG 257486 29 100.0 32 ............................. TACGTACGGCCAGTATGCCTATTAATCCGATT 257547 29 100.0 32 ............................. CACCCAATCAACACCTTCACCGATTAACTGAG 257608 29 100.0 32 ............................. TAATACTACCATGTAATAATGTAAAATGAAAT 257669 29 100.0 32 ............................. GAGGCGTAAATGGTCTAACATGAAAACCCCAA 257730 29 100.0 32 ............................. AAACAGGATTGATAACAGGATTAACCATTTTT 257791 29 100.0 32 ............................. GGGTCGTTATGATTGTATTGGATGCTAAACAA 257852 29 100.0 32 ............................. TATCGTAGACAGTATTAGTTTTGCTACTTGGG 257913 29 100.0 32 ............................. ACCTTTATGACTACCAAAGGCTAGACGGAAAA 257974 29 100.0 33 ............................. TGCTGTATTCAGTAGGTTAGTTTTCACTACTTT 258036 29 100.0 32 ............................. GTAGCCTGATAGACCTTGTTATCGGTGGTCTA 258097 29 100.0 32 ............................. TGACTAGACCAGTAACAGATAATTTTTGATAT 258158 29 100.0 32 ............................. TCGTCACCACTTTTTAATAGCTCAAAAAAATG 258219 29 100.0 32 ............................. GTCATGAAACCATAGAGCCAGTTTGGGATATG 258280 29 100.0 32 ............................. GTATATGCTAATGTAGCCTTTAACTTATGATG 258341 29 100.0 32 ............................. CTAATAACCGAGCAAAGATAGTTGTCGTGAAA 258402 29 100.0 32 ............................. TTTTGCTGAAAGTTCAGGGGTTGGGCTTGTTG 258463 29 100.0 32 ............................. CATTAAGAGAGTGGAGAGAATTACAGGACGAG 258524 29 100.0 32 ............................. AATGTATGCGACATTTAATGACGCATTGTTAT 258585 29 100.0 32 ............................. CATTATTTTATAATATTTATTATATTTTACTA 258646 29 100.0 32 ............................. GAATATTTTGAAATAACCGTCATACACTGGCT 258707 29 100.0 32 ............................. TGTCATACAACTGACCATCAATAATAACGTCA 258768 29 100.0 32 ............................. CCATAGCAGATAGAGAGTTCATCGCCATATAT 258829 29 100.0 32 ............................. CCAGGGCACTTTCCTTGTCTTTAAATACTGGT 258890 29 100.0 32 ............................. TCACCCACACCCATATATCCGACGCCGAACAC 258951 29 100.0 32 ............................. GCGTTGATAGGTTTTGCTTTGGTTATATTCTT 259012 29 100.0 32 ............................. CCGTCAGGCTGTTACCTGCTGAGCGTGTTCGT 259073 29 100.0 32 ............................. CGTTGATATTGGCGTATATCGTCCGCACTGGT 259134 29 100.0 32 ............................. CTGAACTTCATCAATAACAATGATTGAGCCGT 259195 29 100.0 32 ............................. GTTATGTGTCGTGGCAGAATAACGAGACTCTC 259256 29 100.0 32 ............................. CGCCCAATGTTGCAGCGGTCACGATTGCGCCC 259317 29 100.0 32 ............................. TTACCTGTCTTCATGGTCATATACGTTATTAA 259378 29 100.0 32 ............................. GCAGCGACTTGATAAGGTCATCAAAATGACGA 259439 29 100.0 32 ............................. CATTAATTTTATCATTAATGAATATTCATGAT 259500 29 100.0 32 ............................. TCATTGGCAAGATTGGAAGATAAAGAAGGTAA 259561 29 100.0 32 ............................. ATATTAAAAAAATTGGCTACCAGGTTAATAAG 259622 29 100.0 32 ............................. ATGCAATAGCATTCATGACTGCCTTTATTCAC 259683 29 100.0 32 ............................. TACAAATAACCCTTTACAGTTACGTTTGGATA 259744 29 96.6 33 ............................A GCAGCAGCATCACCACGTTCGGCTTTTTTCTTA 259806 29 100.0 32 ............................. TGCTGCAAAAACCAGATAGCACAGCCGTCCGA 259867 29 100.0 32 ............................. ATGCTAAATGCTGGCGGGAATATCGAAATGCT 259928 29 100.0 32 ............................. TAAACTTGCAGATTCCATAATTAACCGCCTAT 259989 29 100.0 32 ............................. AATGGAAAGATAGTGGTAAATTTAAGTCTGTT 260050 29 100.0 32 ............................. ATGAAAAATATGTATTATGGTCTGAATGGGTT 260111 29 100.0 32 ............................. TCATCAACCGTTAAGTCATTACGTTTCGCTAT 260172 29 100.0 32 ............................. TCGCTGTATCTGTCGTAAGCGTCATCACGGGT 260233 29 100.0 32 ............................. AGTTTTTAGAAATTAAAGACAGGTTTAGCGTT 260294 29 100.0 33 ............................. AACGGTATCTCAGTTAATTGAGCGCCCTTGTTA 260356 29 100.0 32 ............................. ACGTGAACGCTAACAACGTGCAAAACCCGCCG 260417 29 100.0 32 ............................. GCGCTGCAATAAAATGCGGTGGTTATCTCGTG 260478 29 93.1 0 ...........G..T.............. | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.8 32 CTGTTCCCCGTAAGCACGGGGATTAACCG # Left flank : CCGCCCGCCATTCCAGAGCCTGATTCTATCGGTAACGAAGGTCATCGTAGTCAATAGCTTGATAAGGAGATAGGTTATGAGTATGCTGGTTGTGGTGACTGAAACGATACCTCCAAGACTAAGAGGGCGATTGGCAGTCTGGTTATTAGAGATTAGAGCAGGAGTGTACGTCGGTGATGTCTCAAGAAGGGTTCGAGAGATGATATGGGAGCAAGTTTTAGCATTGGCTGAAGAGGGCAATGTAGTGATGTCATGGGCAACCAATACAGAATCGGGTTTTGATTTTGTCACTTATGGTAAAAATAGGCGAATACCAATAGACCATGAAGGCATGCGTTTGGTACAATTTTATCCTTTGGAGACTGATGAAAATTAATGCTTTAAATTTCAATGACTTAACTATCCAGAAGATGGACGGGGTATGCTATTTAACAACTAAAAAACTTGGTAGAATAACAACAATAGAAAAATAATAATAATTTCATAGACTTACAACAAGT # Right flank : GTACGCTTAGTAGGGTCTTTAGGATATTACTAGTAGGCATCTGATAATCAGAACTGTCTTTAGACAATAAAAAACCCTTACAAGTCAATGACTGTAAGGGTTTGAGTTTGGTGGGCCCAGTATCAACCATATAACAGAAGTAAAATGCTGATTTAACTAGGTTTATTTAAAATTATTATTGCTTATACCAACGATTATACCAACAAATGAGTTAGGATATATGCTCAGTGATCAATCAATATGGCAAAGAATTTGACCTAAAATATTATTGTTATCTATTGTTAATATAGCGCCTTCTTATGACTAGAGACATCTTAATAAGGAGTAGTTAGATTATTAGATTCAGAAAAATGTAACCCAAAACTGATATTAAAAGCTAGTAATAGCTTCTAGCGAATATCAACTACGATAATTTTTCTTGGCTCTACTAAGTGATCACTTTCAATCATTTTATGAATATCCTGTCTTAACCTTCTATCGCTATCTAGCTGCTGTTGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAAGCACGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4-459 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRYB01000072.1 Psychrobacter sp. Rd 27.2 Contig72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 ...............C............. CCGTGCTTAATCGTACTGGCTGAGACATACAC 65 29 100.0 32 ............................. GTGAAATCGTGCATGAGCTTATCTTTGGTGAT 126 29 100.0 32 ............................. TCCGGCACTGACCACACTTGACCGTAAATATC 187 29 100.0 32 ............................. CCCCGTTATTTACGAGGCTCTTTATCACTTAG 248 29 100.0 32 ............................. AGCCCGCTGGCTGATAGCGGCCTGAATTACTT 309 29 100.0 32 ............................. CATCTACAGCATCATCAATATCACCTGTATAG 370 29 100.0 32 ............................. ACTTGGGATAACTTGGCGCGTCAATACGGTCT 431 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 CTGTTCCCCGTAAGCACGGGGATTAACCG # Left flank : CGCC # Right flank : GCTACCGCGAATTATCACAAGTTGAAATTGACCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAAGCACGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13-347 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRYB01000131.1 Psychrobacter sp. Rd 27.2 Contig131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 ............................. TGTCGGAGTTAAGACAGGGCTGTACTCGCTTT 74 29 100.0 32 ............................. CACCTGAGAGTGACCCAAATGATGCTATTGGA 135 29 100.0 32 ............................. AATTATCGACTTTGACTACCGAGCTTTCACAG 196 29 100.0 32 ............................. CAGCGCAAACGCGATATCAACGCTCAGTTTTG 257 29 100.0 33 ............................. ACAGCGTAGATTGCGACGCCAAGGCTTGAGCAG 319 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 CTGTTCCCCGTAAGCACGGGGATTAACCG # Left flank : TAGCTATACGTCC # Right flank : CAACACATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAAGCACGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //