Array 1 1507-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTO01000102.1 Aggregatibacter actinomycetemcomitans serotype f str. SC29R contig0102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1506 28 100.0 32 ............................ TAAATTGGCAAGAATTGCCGTCAACATATTAG 1446 28 100.0 32 ............................ TTGCGATACCCGTTTCACTGCTCATCAGTACA 1386 28 100.0 32 ............................ TCAAGGCGGCAGACCGAATCGAAGCTATTAGC 1326 28 100.0 32 ............................ AACAGGCGATCGCAATGGCACGCAATAAACTC 1266 28 100.0 32 ............................ TATTACGCTTGTTTTGGCAGCGATTTCAGCCG 1206 28 100.0 32 ............................ ATTCGCCGTAACAATCAAATCCCGATAACGCC 1146 28 100.0 32 ............................ TTTGGTCGTTTGCCAATGACTGGTTTCTAGAT 1086 28 100.0 32 ............................ AATCCTTAGCAACCCCAGAAACGGCGACAGAT 1026 28 100.0 32 ............................ TCTCCGGTAGTCACGCACTTCTCGCGGCGTTG 966 28 100.0 32 ............................ GATTATCAAAGTCAAAGCAATCTACGCTGATA 906 28 100.0 32 ............................ AATCGAAAAAGCTTACAAAATCGTGGGTGGGA 846 28 100.0 32 ............................ ACATGGACCATTGTGTTCGAAAAAATGACGAT 786 28 100.0 32 ............................ TAGCCGAGAATGGGACATCTGGAGAATCCTAT 726 28 100.0 32 ............................ GTCTGCCCAGTCGCTGATTTCTTTGCCGTCTA 666 28 100.0 32 ............................ ATTTGCGCCAATAACCATTTGTCCAGCGTCAA 606 28 100.0 32 ............................ TCAACCCTATTGGCAAAGATGACTTTGACTTG 546 28 100.0 32 ............................ ACCAATGCACAAGAGCTTGAACAAGGTTTGGT 486 28 100.0 32 ............................ GCAAAATGAAGAGGTTCTTCATCTCCAGTATC 426 28 100.0 32 ............................ ATTTACCCGGTGCGAATGCGCCGTTGTTGATG 366 28 100.0 32 ............................ ATAGGAAATGAGCTTTAGCTCTAGCAGTTTTT 306 28 100.0 32 ............................ TTGTTGCGTTTTTGCGGCGGATTGCGAACCCG 246 28 100.0 32 ............................ TTGCCGCCGGGAACGGATTTGCTGATGACATT 186 28 100.0 32 ............................ TATTGCTGCTGTTGCCGAAGTAGCAAAAGTAA 126 28 100.0 32 ............................ GGCATAATTAACGACAAGACGCGCATCCAATT 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTTTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AGAAATGCGGAGCGCGAGTACAGCAACCCGAGACTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 39-246 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTO01000159.1 Aggregatibacter actinomycetemcomitans serotype f str. SC29R contig0159, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39 28 100.0 32 ............................ AACGACGGTAAAAATGACGGTATAGAATAAAC 99 28 100.0 32 ............................ TCGGTCCAGCAATCGCCGAAAAAAACACATTG 159 28 100.0 32 ............................ AAATACGCCGATTAAATTAATCATGGTCAGTC 219 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : TAGAAATAAAACAATCACATCCCCACTTTTAACCGTAAC # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGTAAAATATCATCAACAAGAGGATTTCTTATGAAAAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //