Array 1 48856-48350 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBU01000001.1 Pectobacterium versatile strain CFBP6051 Pectobacterium_sp._CFBP6051_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48855 26 89.3 32 --.........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 48797 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 48737 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 48677 28 100.0 32 ............................ GGACTGAACGGATTGATCGGGCGGGATATTCA 48617 28 100.0 32 ............................ TCCTTCGCCAAGATCAGCGCTTACTTCATATA 48557 28 92.9 32 ...........T.C.............. GTTTAATGGGTTTGTGAATTGCGTTCCTGCAC 48497 28 85.7 32 .......A.T.T.....T.......... ATGACTGATCATGCGCTGGCTGGGGTATGGGG 48437 28 92.9 32 .G.........T................ CCCGATGCACAGATGTCTGCTGAGACACAGGA 48377 28 85.7 0 T.........T..CG............. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 93.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : | # Right flank : GTTTTGGCTTAGTTATCATCCTGATAAGTTTGGTTCACTGCCGCACAGNNNNNNNNNNNNNNNNNTCACTGCCGTACAGGCAGCTAGATGCTTATCGGGATGCGTCGCTGGCGCGACACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCCAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCAGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTCAGCGCTGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 317-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBU01000019.1 Pectobacterium versatile strain CFBP6051 Pectobacterium_sp._CFBP6051_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 316 28 100.0 32 ............................ CTATGCGGCTGCCTAACGATGCCTGTGTTAGT 256 28 100.0 32 ............................ GTATCCAGGTGACCTGTCTCAGTTTGCAGCTC 196 28 100.0 32 ............................ GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 136 28 92.9 32 ............AC.............. AGGACACGTTCCCAGTCGGCTAACAGGCTTTG 76 28 92.9 0 ............AC.............. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.2 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGACCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : ATGCATCACGCTGGCCAGCGTGCCGCTCTTTATGTTCACTGCCGTACAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 87158-88591 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBU01000011.1 Pectobacterium versatile strain CFBP6051 Pectobacterium_sp._CFBP6051_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87158 29 100.0 32 ............................. CTCTTGCCATTACTCACCCCACAATGAGGAAA 87219 29 100.0 32 ............................. TTGATGCTTTCGACAATCAGCGCCAATCCACC 87280 29 100.0 32 ............................. TCGTAGCCCACACCCTTCCACTTCTTCATATC 87341 29 100.0 32 ............................. GCAGGTGAAAGCAGCGGAGGCGGCACTGAAGA 87402 29 96.6 32 ............................C GAAACGGAGGAAAGCACATTGAGACTTGAAAG 87463 29 100.0 33 ............................. TTATCTTTATAGCACAGCAGGACGCTGACGAAC 87525 29 100.0 32 ............................. CGCACTCAGAAAACCATCTGTATCGTCATTGG 87586 29 100.0 32 ............................. CCTGATGAAATCGCGCTACGGGTAGGGAATGC 87647 29 100.0 32 ............................. CTACTCAGGCGCGGCACACTCAGATCGCTGAC 87708 29 100.0 32 ............................. TTGAACGCGATACCAGCCGACACCATAGCAAT 87769 29 100.0 32 ............................. TACCAGGTTGCCCCGATCTGGCGGCTTTTCAG 87830 29 100.0 32 ............................. ACGGCATTCTCTAATCGTTTTCTCAGGTATTC 87891 29 100.0 32 ............................. CGCCTGCCCGATAAAATCATTTCTGATGTGAT 87952 29 100.0 32 ............................. CGAGAAATAGCAGAAATGGACGGCAAGAAAGC 88013 29 100.0 33 ............................. CTAAACGCGGTGAGCTCGATACGCGTGAAGATG 88075 29 96.6 32 ............................T CCTTGCCGTGACAATGCGGGCAAGCCTGGTGC 88136 29 100.0 32 ............................. AGCAACAGGGGATAAATTTTGCTCAATGAAAC 88197 29 100.0 32 ............................. TGAGTTCGAGGTTTAATCATGAAACTACACCC 88258 29 100.0 32 ............................. AACCTGTCATAGCACGCAAGGCGCTTTGTCCC 88319 29 96.6 32 ..........T.................. ATGCGTATTGCTGTGGCAAACGGTATTACGCT 88380 29 89.7 32 ............TG..T............ GACACCGGGCAAATAGAGCAGAACTGTGATGT 88441 29 89.7 32 A.......T.......A............ AAGTCGTTACGATTGCCGCCCCATGTTCCCGT 88502 29 100.0 32 ............................. TTTTCAGTCAAAGCGCGTGATGTATATATCGA 88563 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90788-92890 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBU01000011.1 Pectobacterium versatile strain CFBP6051 Pectobacterium_sp._CFBP6051_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90788 29 100.0 32 ............................. CCAGTTGCTATCAGGAGACTGAAAGCTCGGCA 90849 29 100.0 32 ............................. ATGATTATTTGCTACATCAGAGATGCGAGGTG 90910 29 100.0 32 ............................. ATGGCCTACGGCCTGTTGCGCCTGCGCAACGA 90971 29 100.0 32 ............................. TAATGCCAGCCGTTCAGCGTGGCAAGACTATT 91032 29 100.0 32 ............................. CCGTCATAAATTTCATTCAGGTGTCCGCGTAA 91093 29 100.0 32 ............................. TCATGCCAAGTGCCCATACCGACAATCCCGTC 91154 29 100.0 32 ............................. GCGCTATCCCACTTCATAAAGGAAAAGAAGCT 91215 29 100.0 32 ............................. GGCGGCACTGGCGAACTGCACGCGACGCTTAC 91276 29 100.0 32 ............................. TCACGCTGACACATTTCTAACACCGCTCCAGT 91337 29 100.0 32 ............................. CTAACAACCAGTTGCAATTCCAGGCGCAAGCT 91398 29 100.0 32 ............................. TTAAGTTGTGAATGAAATGTTAAATATGAATT 91459 29 100.0 32 ............................. GATGGTTTGAAACAGGCCAGCCTTTTTAGCCC 91520 29 100.0 32 ............................. AAATAGGATACTACATGAATACAATTCTTAAC 91581 29 100.0 32 ............................. CGATATTGCAGGCTGGAGAGCGCGGAAATGGT 91642 29 100.0 32 ............................. TCGATGATGTAGTTTTTAAAGACGTGCGCCTG 91703 29 100.0 32 ............................. GAATGAAAGAGAAAATATGCTGGCAGTTGCAG 91764 29 100.0 32 ............................. AATTGAACGTCACGCAATACACTATCGCTGAC 91825 29 100.0 32 ............................. CACAATCAACTTTGATGTAAGTGATTTCACCC 91886 29 96.6 32 ............................A CTTGTCCTACTGCAATCATGTTAGGATTGGAA 91947 29 100.0 32 ............................. AGCTACTTTCTTTTTATCCGAGAAATCAAAAA 92008 29 100.0 32 ............................. GGTTTCATACAAATCATTCGCTAACTCTAGCC 92069 29 100.0 32 ............................. CGCGCGTCAAAATACTGGCCTCGCGCTGAGCG 92130 29 100.0 32 ............................. CTTGGAAGAAAATACAGAATAAGCGAAGCCAC 92191 29 100.0 32 ............................. TAATTGTAAAACAAATGCTCGTCGCATGTGGC 92252 29 100.0 32 ............................. TTTGCACTGGCCCCACTTAATGCTCCCAGTAG 92313 29 100.0 32 ............................. TGTTAATTTCACAATGCCCACAATGTGAGCAT 92374 29 100.0 32 ............................. GGATGGACATTAAAACACGCTCACATGCCTGT 92435 29 100.0 32 ............................. GCAATTTATTAATTATTAACGATAAAACAAAT 92496 29 100.0 32 ............................. AGATTGCGGCGCTGCTGGCTGATGAGACCTGG 92557 29 100.0 32 ............................. CGTTCCGACTGGAAAATGATGCTTTCAGAAAT 92618 29 100.0 32 ............................. CGACCGCTCAGGCCGTAAACAGGGTTGCAGGT 92679 29 100.0 32 ............................. CCACAAACATAACCACTTTGACCCGTATATTC 92740 29 100.0 32 ............................. TGAGGGGGAATGTCAAAAAATGTAGTGATAAC 92801 29 100.0 32 ............................. CTATTCCTGATTCATCAATCAAACCCTTACTA 92862 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATGTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATCAGGGAAACGTGGTGATGGTGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGTTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAGGGGGGAAGCATTCCACCTTCCAATGTGTTCCAGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //