Array 1 3221607-3220799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033106.1 Pantoea sp. 201603H chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3221606 28 100.0 32 ............................ ACTGACAACAAACGTGCCTTTATCGTGCAGCT 3221546 28 100.0 32 ............................ CGACTCAATTGGCGTAGGCGCTGGCGTGAAGG 3221486 28 100.0 32 ............................ CCGGAGGGCTGGTTTTATTTCAATCCGAGTTG 3221426 28 100.0 32 ............................ TTTGCCTGATGTAAATATTATCATCACAAGCC 3221366 28 100.0 32 ............................ AAACACTGTTAAAGTTTTCAAGCCTTTTATTA 3221306 28 100.0 32 ............................ GCTGCTTAATACAGAATTGTTTCCGCCTCCAG 3221246 28 100.0 32 ............................ TATGATTGGCACTTTTAAATCAAGATATTCAG 3221186 28 100.0 32 ............................ TCGCTAACTCCGTAATTGCAGTACTCGAAAAA 3221126 28 100.0 32 ............................ AAGATAACCTGACGGATCGCGAGGGGCAGGCA 3221066 28 100.0 32 ............................ AGGATGAAGCGGAACGAAATGCGCAGGCGATG 3221006 28 100.0 32 ............................ AGTGCCGCTTTAAAGAGAAAGTTGCGCTTTTT 3220946 28 100.0 32 ............................ GAAATGTATCGACGGCCTTGATGGTTTTGGAA 3220886 28 100.0 32 ............................ TCAAGCTTAGATAGCTCAAGCTTTCTCTTCGT 3220826 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGTCAGCCATCTGCAACCGGTGGGGGAAGACCCGCAGCGTATTTTACGGCAGGTGATTGAGCAGTTTGAGGAACGGGTCGCGGCTTTTCCTTCTGGTTGCCAGATTTTGCCGGAGTTGCTGAAACTGGGCTGTGCTAAATATCGTGAATTTAATACATTGAATGGATATCGGGTGTTGTATTCGATTAACGATATGACAATAACGGTTTATGCCATCCTCGCCCAGCGGCAAGATATCAAACAATTATTATTTAAGCGGTTGATGATGGTATAGCCTGAAGTCATTACGTTAAACGGTGTAGATAGCGATACGGTAAATTCCTCAATATTTCCGTTGCTCTGATAGCGCTCAGTAATGTCGATTAAGCGACCCTTTTTTTTGCCCTTTACGTATCCTATTGATTTTTAATAAGAGGGAATTTTAATATAAAAAAGGGTTTTTTACGGAGAATGGTAAATTTCCATTTTATAACAATAAGATGAGATTTTTAGCTTCG # Right flank : TCCCTGCAGATTTTAGTGAATGCCTTGCCGTTGATTCTTGCCCTCCTGAACACTCAGAAACAAGCGAATAAGGAAAAACGATCGCAACAAAAAGTTCACGATTCTAATTGCACATTCTCCATGCATTCTTCCCCATTTTAAGACAATACTGTGCGTCGCCATTTACGGTTCAGAGCCTGCCAGGGCTGGCCTGACCGATGGCGTGATTATTGCATCGTGACCTGCCTGTTCCAACTGCCTTATGTTGCCAGTGCGCGACTATATCGCCTGCAAAATGAGCACGTCAGGGACAATTATACTAATGCTAAGGGGTTGTGTATGAAGAGTGCGTTGATCAACGCAATAATAGTGAGTGCCGGCCTGTCGGTTATCACTGCTGTAGGCGCGGAAGAGTTGACCGGAACCTTAAAAAAAATCAATGACAGTAATGTGGTGGTTGTGGGATATCGGGAGTCCAACATTCCCTTTTCTTATCAGGATGATGCTAAAAATGTGATGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3231850-3230869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033106.1 Pantoea sp. 201603H chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3231849 28 100.0 32 ............................ TCCCTGCGTTTTTACCAGGTGATCGACAAAAC 3231789 28 100.0 32 ............................ TCTCTGGAGACTCCCAGCGACAGCATTTCTTC 3231729 28 100.0 32 ............................ TCTGTCTCCCCCTGAATCCTCCCGCTCGCCAC 3231669 28 100.0 32 ............................ GGAACGGCAGGCATTCATTGTTAAACGATGGG 3231609 28 100.0 32 ............................ GGCTTGCTGGGTTTTCGTTATAAACGCTCTTT 3231549 28 100.0 32 ............................ ATTGAGTGCTGAGCGCGTATCAGGGGCATTAA 3231489 28 100.0 32 ............................ CCGTCAGGTCCGGTAAGGCCCGGCGATTGACG 3231429 28 100.0 32 ............................ TGGTTAGCATGAATGGCGTTATGCAGATGCTG 3231369 28 100.0 32 ............................ TGACAGATTCGTCACTAGCGACCGCCGGAAAT 3231309 28 100.0 32 ............................ GTGTGCTTCAGGGGTCAAGGCAAAACGTTGTT 3231249 28 100.0 32 ............................ GCCGAGGTTTAGCGCCTCGCGCACATCATCGC 3231189 28 100.0 32 ............................ GAGCTGGAAGCCGGTGCGTGTCTACACCGACG 3231129 28 100.0 32 ............................ CTCGCTCTTGGTGATGCTGTCGTGTTTCGGGT 3231069 28 100.0 32 ............................ ATGTATGGAACGGAGTTTGGTATCGCTCAAGG 3231009 28 96.4 32 .....................C...... TCCGCTTTTCGCCCGGCTGTCGTGTCAGCACG 3230949 28 100.0 25 ............................ ATTTAGTGACGGAAAAGCGAGGCAT Deletion [3230897] 3230896 28 75.0 0 T.AT.................G.T..CG | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTTTCGATAAAGAGACTCACCGTGTCATCGGTGGGGCGATTGTCGGTACGAACGGCGGCGAGCTGCTGGGTGAAATCGGTCTGGCTATCGAAATGGGCTGTGATGCGGAAGATATCGCGCTGACTATTCATGCGCACCCGACGCTGCATGAATCCGTTGGTCTGGCGGCTGAGATCTTTGAAGGCAGCATCACTGACCTGCCTAACCCGAAAGCGAAGAAGAAATAATTTTTCTGCTTACGGTTGGTTATAAAACGGCTCCCATTGGGAGCCGTTTTTGTTTGTGCCGTTAGCACCGGATGCGGTTACCCTTCTGTTATACGCAGGGGATTTTCTGGCGACGACGCGTGGTACGCATCCCCTTCGGTAAACCCTGTTTTTCTTATTAACCGTAACGTATTGATTTTAAATCACCGCTTTATTGTCTGCGAAAAAAGGGTTTTTCGCGAAGAACGTCGCTTTTCTTAATCGCAACAAAGGGCCAGGCTACTATGGCTTCT # Right flank : ATGAGAGACGTCAGGCGGCCCATCAGCATGAAATATGTTACCGGCTTCTCACGATGAGAATTATTCTGTTGCATACAGTGGCCTCCGGGATAATCCTCGTCTGGATTTATGGAGAATCACGGCCTGTCATTTGAGATGATTTTATTTGCCAACCGGGCGCTGAAGCACATCCAATATTTTGAGCGCCACCGTATACGCCTCAATTTTCAGGATGATCCTGTCCGCGCTGTCGCAATATAAACCTTTTGGGCAGGGCTTTGGCGAAAGGAAGGAAGCCCAAAGTATGCTGGCACCCTCAGATTTAAAAACGATCCTGCACTCTAAACGCGCCAATATTTATTATCTGCAATATTGCCGGGTTTTGGTGAATGGTGGCCGGGTAGAATATGTCACCGAACAGGGAAAAGCATCACTTTACTGGAATATCCCGATCGCCAATACCACGGTCGTAATGCTCGGTACCGGTACCTCGGTAACTCAAGCAGCAATGCGTGAGTTTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //