Array 1 86011-85398 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFB01000009.1 Salinivibrio siamensis strain JCM 14472 scaffold9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 86010 28 100.0 32 ............................ GGCTCTCGCGCGTCGAACTGGAACAACGAGCC 85950 28 100.0 32 ............................ TCGATATCAGACCAGGCACTACCATCATGATT 85890 28 100.0 32 ............................ ATCAGACCCGCCATCGGAACCACCATCAGAGC 85830 28 100.0 32 ............................ TTTTTATAGGCATCTAACAGCTCAGAATGAAA 85770 28 100.0 32 ............................ GCGAATCTCGCGCTGTATCACGTCGTATTTTA 85710 28 100.0 32 ............................ AGAGTCATGCCGCCGAATGAGTCCGAGAATTG 85650 28 100.0 32 ............................ TTTCCAAATTGGATGTTATGTGATTTACCAGG 85590 28 82.1 136 .............T.......G...GTG ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGTAGTCCGCTTGGATAATAGATGGCTGACATTGCACTGGCGCTT 85426 28 67.9 0 ..C...CTA............GAC..TG | G [85422] ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 9 28 94.4 45 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATATTGGCGACCGTACCGCACTTTTAAATTGAACAAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATAGTTGCAAAAGGTGAGTTTTAACAGGGTAAAAAGATGATTTTTACCCTAACAGCCTGTTGCAGCTTATTTTTATTGGTTTATTCTAT # Right flank : ACACAAGCCCCAGCACTATGTTGGATAGGGGGACATTGCCAACGGGCGCGCGTCGGCCTGGCACCTATAACTAACATCATGCTGGCGCTTGTCGACCTACGTGAACGTTAACGTCGGTGGTGCCAGTGGCGATGCTGCCTGTCTGGCTTTTTCATTGAAATGACTAGTTTAATGTATCTCTGAGCCACTTAACTTTATGGCCCTACATTAATCGTTGCGTTTATTTTTATCGAGTAATCAAAAACTAATTGATATCGAGACTTTTCCTGTCCAGCTTTTTTTAATTGATGGCGAGAATCTATTCTACGATCAAACGGTAGTGGCATTTTGGTCGATGTTGTCTGTTGTTGAGTGGCAGGAGTTGGATATGAACATCAATAACACCATGAAGTTAGTGTTCTTTATTATTGGGGCAGGGATTGTCGTTAGTTTTATAACTATTATTCAACTCAACGGCCTGATGAATAAAGTCGATGAAATGGCTCAGGTGCGATATGAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 99860-99007 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFB01000009.1 Salinivibrio siamensis strain JCM 14472 scaffold9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 99859 28 100.0 32 ............................ TAATTCTTGGTTTTTCGCTCGCCATGCCTGCG 99799 28 96.4 32 ...........................W TCGGTCACTGCTTCGCGGTTGTCGGGATCTTT 99739 28 100.0 32 ............................ AAAAACCCATCAGGCGGCAGTGGTAGGTAGAA 99679 28 100.0 32 ............................ GGTGATCGTGGCACCAGTTCTTACTTCATAGC 99619 28 100.0 32 ............................ AGATTGAATATCTCTGTAAGGTGATAGGCAAA 99559 28 100.0 32 ............................ TTAAAAAAGCCCCGCCTCGCGGGGCTTTATTT 99499 28 100.0 32 ............................ GATGAGTATCAAGCGTTAATCTGGCCAGAGCA 99439 28 100.0 32 ............................ ACTCAAAAACAGCTCAACAACGAGCAATGGCT 99379 28 100.0 32 ............................ GACGTGCCGAGTAAATCCGGCGTGGTGTTAGT 99319 28 100.0 32 ............................ TCAGTCCCTCGTTGAATACTTTGCCAGCAAGG 99259 28 96.4 32 A........................... GGACAGAATGTAGCCATTACGAACAATTTGAA 99199 28 85.7 136 .....................G...GTG ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGGTAATAGATGGCTGACACTGCACTGGCGCTT 99035 28 67.9 0 ..C...CTA....T.......G...GTG | G [99031] ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 13 28 95.9 41 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CACTTATCGTCAACATGGTCACTTTTTGGCGGCTTTAAGCTTGTATTGTGTCTTACAATGGCTACGCATCACGCTCCTGGAACGCAGGGCTGTGTGCTTGGTTTTGCGACCACGTGTACGCGCACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTACGTCACCAGGTTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCAATAAGTGGGGATGCCTAAACCCCTTATGACCCTTATTTTTTGGCTATTTAAAAATAAACAATAAATACAGCTAGTTAAGAAAGGCCATTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTATTAAGTTATTCTATT # Right flank : ACACAAGCGCCGGTACGGTGTTGGATATATAAAACTGTCAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGGCTGTAGTACAACATTAAAGTTGTTTGAGGGTATCATGGCGTCATTAAAAGATATCGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGACTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGTGATGTCCGGCTATCGACCTTGCTGCGTGTGCTCGAAGGGCTCGACCTGACATTAACGCTTACGCCCAAAACGTCTCAGACGATCGATGAGCCGGTAAACCTCGGTCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCGTAGCGATGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //