Array 1 386920-391759 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083629.1 Porphyromonas endodontalis strain FDAARGOS_1506 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 386920 32 100.0 34 ................................ TTTTACACCTATTTCTTACGACAGTTTTACTGAG 386986 32 100.0 36 ................................ GTCTCAGATACTTGTTTTTCTGAAAAACTTTGATTA 387054 32 100.0 37 ................................ CATTTTGAATAATGTGATGAACGCAGAGAATGCTCGA 387123 32 100.0 36 ................................ CTGGACAGGCTCCTAGCCTTCGTTACATCGTAAATG 387191 32 100.0 35 ................................ ATTGGATATGGATGGTAACTCAGATATTAAAGTAA 387258 32 100.0 35 ................................ GAATATTCCCGCTCAGTTTGGCTTGGATACACAAG 387325 32 100.0 35 ................................ TTTAATCGTTTTTATTACGTTCCTTATCGCATTTT 387392 32 100.0 34 ................................ CTGGACAGGCTCCTAGCCTTCGTTACATCGTAAA 387458 32 100.0 34 ................................ ATTAGACATGGATGGTAACTCAGATATTAAAGTA 387524 32 100.0 34 ................................ TTGATAGACAGATTGAATCTATTGATTTACAGAA 387590 32 100.0 34 ................................ TGAAAAACTTTGATTACCTTTGTATCGGTAATAA 387656 32 100.0 34 ................................ TGCTGCTGGTTCGACTCCCGTAATACCCTAATTA 387722 32 100.0 35 ................................ TCAAACTTTCAGGCCACATTATCATCTCATAATGT 387789 32 100.0 34 ................................ CAAGCACGTATTTAAAGTCAAAGGTAAAAAAACC 387855 32 100.0 35 ................................ CAAGCACGTATTTAAAGTCAAAGGTAAAAAAACCT 387922 32 100.0 34 ................................ GCTTGGAGCTTCGAATATTCCCGCTCAATTTGGC 387988 32 100.0 36 ................................ GACGTTCGGCATGGACTGTCCGCAACCTTGTTGAGT 388056 32 100.0 33 ................................ TTTTACGATCCCTGTCTCTGCATCAACTTTATT 388121 32 100.0 36 ................................ GCTAACAAATGTAACAATGGAAGTCCAAATCGAGCT 388189 32 100.0 35 ................................ TTACCCTATGCCTCGTTTTTACATCGAACGTAAAT 388256 32 100.0 36 ................................ CAAATTCGCCGTGCTCGCCTTTTTAGGGATTATTTT 388324 32 100.0 35 ................................ TTTGGTAATATGGCTAATGCCCCGTCTTCGATCCC 388391 32 100.0 35 ................................ ACCTGAACCAGACAACCCTCCTACGCCAAATGAAC 388458 32 100.0 34 ................................ CTAATACACAGTACGGCAGTGCTGTCTCTCTGGA 388524 32 100.0 35 ................................ GCAACTCGTTGAACTATTGGCACTTTGGTACTAAT 388591 32 100.0 36 ................................ AGAAAAACTTTGATTACCTTTGTGTCAGTAAAAGTA 388659 32 100.0 34 ................................ TGAGGTACTCCAGCAACCGATCTTGCTTGGTTCA 388725 32 100.0 36 ................................ TTGTCAAAAACTTAATTCCCCATCATCTTTTTCAAA 388793 32 100.0 33 ................................ CTTGATTATTAACTATTAAATATGATTTTATGT 388858 32 100.0 34 ................................ TTAACAATGTCATGAACGCTGAGAATGCTCGAAA 388924 32 100.0 34 ................................ ATCTAATACAGGGTCTTTATAAAAATAATTATAA 388990 32 100.0 35 ................................ TAGGAGTGTTATATCCACGCTTAAGATAGGTTTTG 389057 32 100.0 37 ................................ AGATCCGGCGTGCTCGTCTTTTGAAGGACTACTTTAC 389126 32 100.0 34 ................................ TGAAGAATTGTCAACAGGAACTGGTCGGTTAAAA 389192 32 100.0 35 ................................ TTTTGCATGGTGCTAGGTACATTGATTACCTTAAA 389259 32 100.0 36 ................................ ACTTCTTGATAGACAGATAGAATCTATCGATCTCCA 389327 32 100.0 36 ................................ TTACTACTGGACGTATGGGATGAATAAGGTAGACAC 389395 32 100.0 35 ................................ TACATTAAGCGGGGGTATAACACCCCCCGCAAATT 389462 32 100.0 34 ................................ ATCTTTTGGTGGACACACAGGAAAGTCTGTTTAC 389528 32 100.0 34 ................................ TTGGCAGGATGTAGTTCCAGGTGACACGTTCAAA 389594 32 100.0 33 ................................ TGAGAAACTTTGATTACGTTTGCCTCCGTAAAG 389659 32 100.0 34 ................................ AATCTTACTAATGAGCTTAAAACAAGCTTTGAGA 389725 32 100.0 34 ................................ GACCGAAAAAGGATTGTTTTTTACGCGAGCATCT 389791 32 100.0 34 ................................ TCTAGACATGGACGGCAATTCAGACATTAAGGTG 389857 32 100.0 35 ................................ CCATTTTGTTTTTGATTACAAACTTTGGTAAGGAT 389924 32 100.0 34 ................................ AGCCTCTTACCGCTCCTGTTATGGATAGACTTCG 389990 32 100.0 35 ................................ CAGTTATTGGCTTTAGAATATCGGATAGCAAAAGG 390057 32 100.0 35 ................................ CATTTTGAATAATGTGATGAATGCGGAGAACGCTC 390124 32 100.0 35 ................................ GATTATAATCGAAATGCCAATAAGGGTTGTCCGTC 390191 32 100.0 33 ................................ AGGAACCGGTGCTCTTGCCGGTTCCATTTTGAA 390256 32 100.0 35 ................................ GATATAAAATCGGGGCATTGGGTAAGATCGACCTA 390323 32 100.0 35 ................................ GATATAAAATCGGGGCATTGGGTAAGATCGACCTA 390390 32 100.0 34 ................................ TAACAGTCCAAGCAGAACGTCTTAGAGATTGACA 390456 32 100.0 34 ................................ TAATAAAGTAGAAATTTCGTCAGAACTGAGAGAC 390522 32 100.0 36 ................................ AGCCTGACTCTTTAATAAAAGAGATTGTAAAATCCC 390590 32 100.0 35 ................................ ATATCCATTATCTCCAACGACAGAAACAGATTTTC 390657 32 100.0 34 ................................ ATTACGATCGTAATCAAAGTGCCAATAAGGGTTG 390723 32 100.0 35 ................................ TTAATAATATCTGTCCAGAAATTCTGCAGGTCGAT 390790 32 100.0 34 ................................ GTTGTATCCAAAAACGTCCTTACGCTCTGCAGAA 390856 32 100.0 35 ................................ ATCAGAACCAAGAGACTGTAAATCAACAGGGAGGT 390923 32 100.0 35 ................................ GTAGTCGCGTGAAGATGTGGAGGGATCGAAGATTG 390990 32 100.0 35 ................................ CGGGCTAGCTGTATCCTCGTCTCCTGCAAGCTCTC 391057 32 100.0 33 ................................ TTTAAATTATTGGCATTTTGGCACTAACCTTGG 391122 32 100.0 34 ................................ GAGGGGCAGATTCAATAACAGAGAGAATAATGGA 391188 32 100.0 37 ................................ ATGACGAAGTTTAGAATCTCTGATAAACTCACGATAA 391257 32 100.0 33 ................................ CCTGTGTCTTCGTTGTACTTTGTCTCAACAACC 391322 32 100.0 36 ................................ TCTCTTTAGAGCCACAGAGCCACGATAGAGTAGTGT 391390 32 100.0 35 ................................ GCGTAAAAACTGAGCAAATTGCACTCAAAATCGGA 391457 32 100.0 36 ................................ CACAAAGCGACCTGTCTATTGTAAGCAGTAGTAGCA 391525 32 100.0 36 ................................ CTGCAATCATTTCATTTATCATATCAAAACTCTGTC 391593 32 100.0 36 ................................ CATTGATTACTCTAGAGTGTATACACATGTTGTTTT 391661 32 100.0 35 ................................ GCAATCTTATTGAGTATCAAAATTCTGAGAAATCT 391728 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 73 32 100.0 35 GTCGCACCCTTTAGGGGTGCGTGAATTGAAAC # Left flank : GATTATCCCGTATTCCTCATCCAATAGCATTGCTCTATATGTATGTACTAGTAACCTATGATGTACAAACATCTGATCCACAAGGAGCTAAACGCCTTAGAAAAGTTGCCCGTATTTGTAAGAATTATGGACAACGAGTGCAAAACTCAGTTTTTGAATGCCTTGTAACCCCAGCTCAAATGGTCTCATTAGAGCAAGAACTCTCCTCTAATATAGATCATACCTCCGACAGTTTGCGCATCTATCAACTCGGATCGAACTATAAACATAACATTAAAATGATTGGCAAGGAAACCTCTTTCGACTTTGAAGGAGAGTTGTTAATATAGCAACTGCGAACCTCATGCTATCAGTAAAATCCTCTACTATTCGCAACTCTTGATTCTCAGGATTATAACATATTACCGAGCATTATTCGGGTACACTCCTTTTTGTAGTACATTTGTTCTCGCAAAAATGGAGCTATAGTACCTCTATTTATCAAGTCTATAGCCTCCGCA # Right flank : CTGTCTTTTAGCCCTTGCAATGTATGCAATTAAATGTCGCACCCTTTTTCCATAAGTACAGAAAAAGGGAACCCCTCTCAAGGGAGCTCGTCGCAGAGCGAGGCATCTTGAGAGGGGCGATTTGTATTCTTATAGGATTGGCGGGATCTTAGGGAGTATTCCCATCCACATCCTCCTGAGGTAACACGCTATCAGTGGGCTGAGGAGTCGGCTGGGCTGCTCCGTCTTGGTCAAAACCACGAGCGGACTCTTCTCCATATATCATTTGGATAAAGCCCATCAGCGTATTAGCTTCGTGGTCTACCACTTTGGAGCCATGGCTTCGTGCCACTTGCAAAGCAAGGCGAGCCACAGAGAAAGTCTCGTCTACTACCCCGTCTCGATAGTGGCGGAAGAACATCTTTTGCAATCGTGAGCCTCCCATCGCAAGGTTCATAAGCCAACGGCTCTTGCGCATATATTTGGCCATTACATCCGAAACGATCTCATCCCCTCGCTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTAGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 2 564312-563035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083629.1 Porphyromonas endodontalis strain FDAARGOS_1506 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 564311 30 100.0 35 .............................. CGATTTCAAACTCCGCTAGTCTTGACTTTGACAAA 564246 30 100.0 36 .............................. AGGTTAAACGCAGAAAACCTAGCATTATCTTCATCG 564180 30 100.0 36 .............................. AATCAAACTTATAAGCTTGCTTAATGTTAAGCGTTT 564114 30 100.0 36 .............................. ACTCGCCAATCAGTAGAAGGTTGTTCCGGAGCTTGT 564048 30 100.0 34 .............................. CGCTATATTGTCTCTCTCCTTTGTCCCCCTTATT 563984 30 100.0 36 .............................. AAAGAAAGAAGATAAAGAAGAGAAAGGAGCCTCTCT 563918 30 100.0 34 .............................. CAAATAGACTGGGAGAAAAGGAAATACGAGATAG 563854 30 100.0 38 .............................. AGCCTCAAATATATTGTAAATGCACTCGCAAATGGCGA 563786 30 100.0 35 .............................. GAAGTTTTGAAGATCAATAGACTCTATTTGTCTGT 563721 30 100.0 36 .............................. TGTTTAATTTATGCTCAATATCGTAAAGAGTAGGAG 563655 30 100.0 35 .............................. GAAGTCGCAACACCAACGTTAAGAACCTCATAATC 563590 30 100.0 36 .............................. ATTTAGTTGAGACCATTGCTGAGCGTCGACGAGTTG 563524 30 100.0 35 .............................. ATCGCCAAAGCCCGTGAGGGCGAGGATGACATCGT 563459 30 100.0 36 .............................. AAGGCAAACTGCTCCTTGTCAGACAGCTCGGCAAGG 563393 30 100.0 35 .............................. ATCGCCAAAGCCCGTGAGGGCGAGGATGACATCGT 563328 30 100.0 36 .............................. AAGGCAAACTGCTCCTTGTCAGACAGCTCGGCAAGG 563262 30 100.0 34 .............................. AAACTTATCGAAGACGAGGCTGGTCGCACAATAG 563198 30 100.0 38 .............................. TTCGTAGTCGACTTGTCCGGGGATGATGATCTTCTTCT 563130 30 100.0 35 .............................. TGATCAAAAAAGATTTACTTCGTTGCTCTCTTCTA 563065 30 86.7 0 ..............C....AT.G....... | T [563040] ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.3 36 CTCCAAATTGTACCTTAGTGGAATTGAAAT # Left flank : TATTGGGAAAAGAAAAAGCTGCGATAGATAATTTCCTCTAGCCATGGAGATCCGAGAAAGTTTTATTCTTTCTAGCATTACGAGGGGCCTTTCTCTGTTGTATGGGCGCCTATAGTACAGGTTCTTGATACTAGGTAGCACAAGATTGCTAGGGTCAAGGCTTCTACTAAACGATAGATTGCTACTGAAGAGAGTACTTTTCTATTTCAGTATTTATTGGTAATATTGCTGGAGCTAGATAAGTACCAGTTCGCACAAAGAGGGTGGGAGATAGCGGTTTCAGAGCTCTTTTTGTGTCGAAGAAGGAGCTTTTTCTGAGGATAGCCATACCTCAAATAGATTGCACCGTTGAAGTGTTTGGTTAGCAGATAATTAGTGCTCTTGTCGATCCTCGGCCCTTTTCTTAGGATTGCACATCGACGATATTTTCTCCTCATTATCTCATCGGAAACGTTTCTCAAAGCCCTTGTTTATGTGATATTTTCTGTCTAACTTCACGG # Right flank : ATGGGGGGGAGTCAAATGGGCGTTCTCTCTTGATGTCACGCTAACAAATTGCTCTCAGAGGGAGGGGGAATTGGATTGTCCTGTGGATGACATAACCATTCATGGGGCAATTTTTTGTTGAGTCGAGGGGAGAGGGCAAGAGTGGTTGAGTTGAAGATATATAATAGACAGTTCTTTTTATTGCGGCATTTCGAATAAAAATCTTACATTTGTGCCGAATAGGGTTAATGACATGGAGATATAAATTATTCCATTTCTTGAAGACCTTGATTATAATGAAGAGTATAAATGAATCAAAATGCCAGAGATGAAAAGGAATTTGTTGCTTATTGTGGGAGTCTTCTCCTTCGTTTCTCTCCTTCTTGCGGGATGTGACAATGGGACTAAACCTCCCTCTCCTCAGAAGATTTCGGAGATAAAATTTGAGAAAGAAACTGTCAATCTTTCCGTTGGCGAGAGTCTACTTCTTAGGCTCATTGCTACGCCTAAAGAGGCTACTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCAAATTGTACCTTAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //