Array 1 3364-2668 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZS01000020.1 Streptococcus halichoeri strain S244 NODE_20_length_38776_cov_130.551062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3363 36 100.0 30 .................................... CTAATTTTATTGGCTTTGTAGGATACTTAG 3297 36 100.0 30 .................................... AACAGCGTAAGAAGCCCAATCTCGGCTTTG 3231 36 100.0 30 .................................... GTAAGCTTTAAGGTCGCGTCCAGAACCATC 3165 36 100.0 30 .................................... CGATAATTTCGTTATCAGCATTCATCCAAT 3099 36 100.0 30 .................................... TCTAGAAGAGGCTTTGCAACGCAAAGCTGT 3033 36 100.0 30 .................................... CCGCCGATTAGTTAAAGATTTGTCTAAAGT 2967 36 100.0 30 .................................... ATGGGATTTAGTCAAACAAAAAACGAGTTG 2901 36 97.2 30 ...............A.................... ATGCATTTCTTGGAGGAAGGGAGCTAAGGA 2835 36 100.0 30 .................................... TTACAGACGATTGGGAATTTAAGGTTTTTA 2769 36 100.0 30 .................................... CTTGCCCTGCTTTATCGTCAAAAATTGGTT 2703 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.5 30 GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGATGAAATAACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAGTATATTGAATTATCTCAGCAAACGGTCCTCTTGTTAGAGCCAAGAAGTTTGTACGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTCCTAAAAACCTTGATTTCATAAGGCTTTTGCCGTATAATAATACTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAGTGGTAAAAAAATGTCGCATCATGTGAGGGGTAACACGAAAACCAAGAATTTTGTACGACAAATACCTAGCACTTCACAAAAAATAAGACAAAGCTATTTATACAGAATTATGTATGTCTGAGAGTTTTTATTATGATACGCTTGATATTGCACTATTAGCTTTTACAGAGCTTTACAGAGAGGGTTCTTTGATTGTTGAACGAGGAGTTTTTAGCTGGTTTATACAGTAAGTGAGCAGTTTATACGTGAAATTGTATGCTATTATAGTACTATCAAAATAGCAAGAAGAGATAACTGTTTTTTCAATTGATTATATTTAGTCGCCAACTTTAACGACGATCAAACTTGTTATTTTATGGGGACGGTCCCCCGGCGGGGACCATTTATCCGTCATGGCTCAAAACGAGGAATGCTAATGGACGCATCAAGAACCGTCGCATGTGCAGAACAGCAGACTGATAATCTGAGGTGTTAGTTCGAATCCGGTTGACGAGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 617-185 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZS01000041.1 Streptococcus halichoeri strain S244 NODE_41_length_10325_cov_122.566974, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 616 36 97.2 30 ...............A.................... TCGTGGACCAAGCCGAAATTTACGGCGATA 550 36 97.2 30 ...............A.................... AATACTGCGCTAATTACACCGGTCAATGAT 484 36 97.2 30 ...............A.................... CCTTCAAAAACATTTTAATATATACGGATT 418 36 100.0 30 .................................... GCTTGCGTGAGCGATAATACCATTCGGAAA 352 36 100.0 30 .................................... TGAGACTTTGGAAGAAAAACAATTTTTAGC 286 36 100.0 30 .................................... TGGTAATGAACTTTACGGGCTTTAGTACAT 220 36 86.1 0 .............................TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 30 GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : GCTATCGTTCGCGGGGAAGGGCTCACGCAGATGAAAGGATGTAAATGTTCCTTTAAAAGCTATGCCGTGCTTAAAACCAGTCAGATAGTTCAAGTTAGCCAAATTTAAAGAATAATGATGTGATAGGTAAAGGGGAAATGAATGAGGCGGACCGTAAATTAGGCGATTTTTACTGTGCTTATCAAGGTAAAAATCGCTCATGCTCCGCCAATTAACCGTAGAGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTCCGCCTAGAAATTAATCTGAGAAAGCTGAAAAGCAGCGCAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGCTTTTGCCGTATAATAGTGCTATGAACGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCGCCTTTCCCCGTTTGATTGCTAAAACTAAAAATAAATTTGAAAACTGTACCTTTGTCAATGATGTGAGACCAAAGCAGGGATTGAAAGAAACTGAATATGCTATTCTCTAGAAGGAGCTAGCTGCTTCTAGTTTTTTTCTTGTTTCGATGGGTGAGAGCCAGTCAAGGGTC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : GCTTTAGAGCTATGTAGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //