Array 1 1511-872 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQG01000004.1 Bifidobacterium longum strain MCC264 NODE_5_length_76065_cov_78.617271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1510 28 100.0 33 ............................ GCCGGATATTATCGAATCGGATACGCGCATGGA 1449 28 100.0 33 ............................ GAATCAGACTAGCGGATGACAGGCCGAGAAAGC 1388 28 100.0 33 ............................ CGCTGGTCGCCGTCAGGTCAATATGATTGAGAC 1327 28 100.0 33 ............................ TCCACCTTGTGGAGACTGCTCCCGGCGCGCTGA 1266 28 100.0 33 ............................ GGATATTCAGTCGCAGTTGAAGAAGGATGCGAC 1205 28 100.0 34 ............................ CTCACTGGCCGCGTGCTGCTCTCCCCCCTACGCC 1143 28 100.0 33 ............................ TAGGGACTTTGGTGCACGGCACGGCACAGTTCC 1082 28 100.0 33 ............................ GCCGACTCGCTGCGTCTGGTCGCTCTGGATGCA 1021 28 100.0 33 ............................ GGTGAGTGTCTTCGTCCGGCAGCGTCCCTCCGC 960 28 100.0 33 ............................ TGGCACGTGCAAGTACTTGACTTGGTTGGTCTC 899 28 96.4 0 ..............T............. | ========== ====== ====== ====== ============================ ================================== ================== 11 28 99.7 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CTTGGAAGCGGGTGCTTAAAATATTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCGCTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 5748-5228 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQG01000004.1 Bifidobacterium longum strain MCC264 NODE_5_length_76065_cov_78.617271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5747 29 96.6 32 ............................C GGCAGGCAGCTGTCGCATAAGCCCAGCAAGGA 5686 29 100.0 32 ............................. CAAACAGGCTCTCGGATACTGAGAGCTGAGAC 5625 29 100.0 32 ............................. GGCGTCGTGTTATGGCTATGCACGTTTGTGCT 5564 29 96.6 32 ............................C ATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA CCC [5555] 5500 29 89.7 32 ............CA..............G AAAGCGCCATTCGAGGATCTCGATGTCCATAA 5439 29 86.2 32 .T..........CA..............G AACGAAAGTCCTGAACATCTCGCAGATTTTGC 5378 29 82.8 32 .T......T...CA..............G CGTCGGCCGAGCTCAATCTGGGTGATGCCTTC 5317 29 89.7 32 .T..........CA............... TGGAACGCGCCGTTGCCTGTACTGCAGGCCGA 5256 29 82.8 0 .T.....T..T.CA............... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 91.6 32 ACCTACCCCGCAGGCGCGGGGATAAACCT # Left flank : TCGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTACGACGCGACTGGAGCCGACTGCTCGACTGATTGTCCACCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGAACAAATTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : GTGAACCACTTTTATTGACATCTGACTTTTATCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTACCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCAGGCGCGGGGATAAACCT # Alternate repeat : CTACCCCGCAGGCGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //