Array 1 719635-720700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFPX010000001.1 Pseudomonas aeruginosa strain S4 NODE_1_length_1034521_cov_69.515812, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 719635 29 100.0 32 ............................. GCCGTGAGTGGGCGCTTGATCCCCTGCCGGTC 719696 29 100.0 32 ............................. ACCTTCGGCGGTCGCGCCCTCACCGGCACAGC 719757 29 100.0 32 ............................. CCGGCAATCCTGTTCGAACGCCACATCATGTA 719818 29 100.0 32 ............................. TGGTACACAAGGCATAGGCAAACCCCCGTAAC 719879 29 100.0 32 ............................. CGCGGGCTCGATCGCTGGGCCGCCTGGCTCGA 719940 29 100.0 32 ............................. TTAGGCGGAGCAATCAAGACTGCTGAGCGCTG 720001 29 100.0 32 ............................. AACTACTCGGATCAAGAGCGGCCGCCCATCAG 720062 29 100.0 32 ............................. CGGAGCCCCGATTGGGTATTCGGCAAGCTGGT 720123 29 100.0 32 ............................. ATCGAACAGAAAAGAAAGCAGATCGCATCAAA 720184 29 100.0 32 ............................. GTAGCCGACCAGATCCTGCCGCAGTACTGGCA 720245 29 100.0 32 ............................. TACGGGAATGATGTCTGGTGCCACCTGCCAGA 720306 29 100.0 32 ............................. CCGAGTCCCTGATGGGTACGGTGGCGTCCACC 720367 29 100.0 32 ............................. CAATGAGCGCGACCAGTACCGTGCCTCCGCTG 720428 29 100.0 32 ............................. CTGTCGAGTATCTTCAAATCGGCGCTGGCGGA 720489 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 720550 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 720611 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 720672 28 79.3 0 A..........A..C..-.....A....T | C [720676] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.3 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 729874-730514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFPX010000001.1 Pseudomonas aeruginosa strain S4 NODE_1_length_1034521_cov_69.515812, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 729874 29 100.0 34 ............................. GCCTTCTATGATGGAGTTCGGGGCATCGGCCAGC 729937 29 100.0 32 ............................. ACCACCTTGGAGTATTTGTCGGAGAACTTCTG 729998 29 100.0 32 ............................. CAAATGCAGAAGGCGCAGGCTGCAACCGCGCG 730059 29 96.6 32 ..............T.............. CATTCGATATTGAGGTTCACAACTTTACATGC 730120 29 100.0 32 ............................. GACGTTACCCTCGAATTCCTCGGCGGCTTCAA 730181 29 100.0 32 ............................. TCGTGAACAACCAGATTCGCTCTGGAACTTCA 730242 29 100.0 32 ............................. AACACCCCTTTGTAGAGAACCCGCTTCATCAT 730303 29 100.0 32 ............................. CATCCGCAGAGACGCCAGCTCGGCTTTGTAGA 730364 29 100.0 32 ............................. GACTACAAGAACATGCTGGCGATGCTGGAGGC 730425 29 100.0 32 ............................. CTCGCGTGGCCGCCGCTCTATGGTGAGGAGGG 730486 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 11 29 99.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGTGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATCGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGTTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTTTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //