Array 1 1-446 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBTY01000222.1 Caballeronia sordidicola strain PAMC 26510 contig-3000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 26 92.9 32 --.......................... ATGAGGATCGTGGACGGCACGTCTACCAACTT 59 28 100.0 32 ............................ AGCGCGGCGTCATCGAAATGCAACTCGATGTA 119 28 100.0 32 ............................ GTCTTGCTCAACGACATAGCAGCGCCCGATCG 179 28 100.0 32 ............................ ACCCCGAAGGCATCGAAAAATTGAAGCCCATT 239 28 100.0 32 ............................ ACAAACATATCGACCGATCAGCGCGTGGCCGC 299 28 100.0 32 ............................ AGAAGCCGAGGAGAGCTTTGAGGTGGCCGCCA 359 28 100.0 32 ............................ TGCAGCAGCCCGACAGCTTTGTCGATGATGTC 419 28 89.3 0 ...C........G..............C | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTTTGCTGCCGCACAGGCAGCTCAGAAA # Left flank : | # Right flank : CCCACTGTGCTCGAAGGCTGCTGCGCCATCAGAGGTGTGCACGCGAACGCACCAGTTTTGAACGCATCGCGATCCTTCGTCGAGATCAATCGAAGTTGATTACTTCAACTTGACGTTGATAACAACTGGTGGAATCACTTCACGTAATTTAAGAAATTACTGAGCTTGCTAATGTGAGCTTGGGCATTAAGATTTCGCCCCGCGGAGTATTCCTATCTGTGGCACAACAGGCTTCGTACCATTGCTTCGCAGTAGGAACAATTCTGGTCCCGGATGACGGAATTTTGATTCGCAGTCCGTGCCGCCCACTTTTGCCGTAGCTGAAGGCCTGCGTTTTTGGTGCGACAGGATTTAGCACAGCTCGCATTAGCTCACGGTTATGACGCGTAGCGCGCCAGAACGAACTGCTTCCCGAACGGCATGGCGCTGATATTCCGGTCCAGCACGCGGTCCGAGTCCGCGTAAAAACAATAGTAATAAGAAGAGAGAAGCATGAATCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 123059-122623 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBTY01000066.1 Caballeronia sordidicola strain PAMC 26510 contig-3000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 123058 32 100.0 36 ................................ TTCAATAGTTCAAGTTTCATTAACCTCCCAATAAGC 122990 32 100.0 36 ................................ CATGCGAGCCACCCGTAATCCGTCCCGCCGATACCG 122922 32 100.0 35 ................................ GAATCCAGCAATGCGCGTCATCAGTTCGGCGCGGC 122855 32 96.9 35 ........T....................... TGAAGCGCATCAACCTGACGCCGGTGACGGAGCAA 122788 32 100.0 35 ................................ TGCCAACGCTCGACAAGGCCGATGCGGTTATCACG 122721 32 100.0 34 ................................ GTGGGCAATATCTACGGTGTCATCGCGATCAAAG 122655 32 90.6 0 .......................A..C.G... | C [122625] ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.2 35 GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC # Left flank : | # Right flank : CGGTTCCATGACAGCGGTTAAGAGCGCGCGCTGTCGCGCTCTTCGTGCACGGGTTGAAACGACCACCAATAACCGTACCAAAATCGCATAAGCGCACATTGCACTCTTCCCGATCACGCGGACCGACAGCAGCGGCACTTCATCTTCAACGCTGGCCACCCATTCTCAACTCGACCGATCGCCATGTACTATATCTCCATCACCAAACCACCTTACGCATTGAAAAATAATTTCAACAATCCTAACGAAATCCCTCATTCGTCAACAGCGCAAACTCGATCATCCTGAAAAATTGATATATCCATGGCCCACCACGTTCTAATCTGCCTCCCCACCTACGGCGAAGAAGTCCACGTCAATTTCGCGTTTTCGCTGCTCGGCCTGGCGCGTGAATTAAACAATTCCGGATCAACCTACGAACTGTTGCACGTTGCATCGTCGCAGATTATTCGGGCGCGTAACTTCTTCGCCAATTATTTCCTTAATAATCCTAAATTTAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 763-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBTY01000120.1 Caballeronia sordidicola strain PAMC 26510 contig-2000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 762 32 100.0 35 ................................ ACCATTCGTTTGATTCAACGGCAACGGCTACCATC 695 32 100.0 33 ................................ TCATAGGCAACGATATCGGCGGTGAAATGCGCG 630 32 100.0 33 ................................ TACCACGATGGCGCCGAGAAACTGGCCGGATTG 565 32 100.0 34 ................................ CTCGATCACCTCATCGACAATACGGTCGGCAGCG 499 32 100.0 35 ................................ GCTACGACCGTAGTCGGACGAGTTGGCCGTGCTCT 432 32 100.0 36 ................................ GAATATGTAGACCCAGAGTAGCGCGTCGAACCTATA 364 32 100.0 34 ................................ GTCCGGCTTTCGCTGCATCCTCTAAAGCCGAGGT 298 32 100.0 35 ................................ GTTGCGTTTTGCGTATGCCCCACGCCCTAGCAACC 231 32 100.0 35 ................................ ACCGTCGAAATCGATTTGTCCGAAGTCCAGTTTGA 164 32 100.0 34 ................................ TCCCCGGTCTTCGAACCTCGTCGATTGCCCGCTC 98 32 100.0 34 ................................ ATCTAAATTACGGTGGCATGGGTACGGTGGCATG 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 100.0 34 GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC # Left flank : GAGCTACGACGTGGCGACATCGACGGAGGGCGGCGCGCGCCGTTTGCGACGCGTCGCTCGCGCCTGCAAGGATTTTGGCCAGCGGGTGCAGTACTCGGTGTTCGAGATTGAAGTCGATGCCGCCCAATGGACGCTGTTAAAACGCCGGCTTGTCAGTGTGATCGATCCCGATGTGGATAGTTTGCGGTTCTACTTCCTTGGGAATAACTGGGAGCGGCGGATTGAACACATCGGCGCGAAAGAAGCGGTGGATTTTAATGCGCCGTTGATTGTTTGAGAGGGGATCGCCGTTTTGGTTTGATTGTTTGGGCGAGTGCGAACGTGTAGCGACCGGGATTTTACGGGGAGGTTCGCGGATTTGCACGGCGTTGAATTTGTTAGGGATTTTTTTAAGCACGGTGGGAATTTGAGGACGGAGGCGTGTTTGGGCCACAGAAGAGCAGAGGTTCGCGGAATTGGGCGGTTTTTGTCTGGCAGTACAGTGGGTTAGGTTAGGTGGG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9726-8961 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBTY01000120.1 Caballeronia sordidicola strain PAMC 26510 contig-2000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 9725 31 100.0 35 ............................... GTCCAAGCGGTCGCCAGTCTTCAACGTGCCAAACG 9659 31 100.0 34 ............................... TTGCATCCAAAGCCCGTTGAGCCAATAAGCCGAC 9594 31 100.0 34 ............................... GCAAGAAACTCGCGCGGCTCCACCGGCGTGAGGT 9529 31 100.0 35 ............................... GACACAGTCAGCAAACTAGACGTCACGCGCCCGAG 9463 31 100.0 34 ............................... GCTTGATCTCACGGGCGCGCGCGTCGAACTGTGG 9398 31 100.0 36 ............................... GCCGCCCGCAAAAAACAAGCTGTTGATTGACTACGA 9331 31 100.0 35 ............................... CGACAATTCGTCGAGACGTGCGATACATCGGCTAA 9265 31 96.8 35 .........................C..... TGAATTGTTGCTGGCCTTGGCTATCGCCAAAGCGC 9199 31 100.0 36 ............................... ACCATCATGGCCGCGTGTGTGGACTCAGGCGGGCAC 9132 31 100.0 36 ............................... GCCACTGGCCGGGGCTGTAGCGAAGCCATTTACACC 9065 31 100.0 35 ............................... TATCGGGGCCTATGGGTGTATGGCAGCAAGCCGTT CGCGGGTG [9039] 8991 31 87.1 0 .........C............A...T...G | ========== ====== ====== ====== =============================== ==================================== ================== 12 31 98.7 35 GTCGCGTCCTCACGGGCGCGTGGGTTGAAAC # Left flank : | # Right flank : TGGCGCAAGTACACACGGCCACCGCACTCGAACCGCCGCGCATTCACGAGGCGGGTTGGAAAAATAGCCAAGACCGCGACGCTCCACAGCGGCAAAACGCCGCGCTTCCCCCTGCACACAGTCTGAAATTGGAATGACATCAAGCTAGGTCATTCCACGGCCCTACCAACTCACTCAAAAAATTACACTAAATTCATTTTATAAGATACCGCCGATAGTAAGCTCTGCGAATTGCAGGTTGAACATCGATAAAGCGGCGACCCAAGCCGCCTGTTCCCCACGAGTAAAACGCCTGCCAACCAGTCCAAAGGCGACGCCCGTGACAAGAATTTTCCACGCACACTCCACGTCTAACGCTGACGAAACCGACTGGCAAACACTCCCAGATCATCTGAACGCGGTGGGAAAACTCGCGGGCCAAGCGGCCAAACATTTCGGTTCCACCATGCTCGCGGAAACGGCTGGAAAGCTACATGATCTCGGCAAATACACCGACGCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55095-55236 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBTY01000155.1 Caballeronia sordidicola strain PAMC 26510 contig-8000012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55095 28 100.0 32 ............................ AACCAGACACCACGCAGCGCAAAAAACATGGG 55155 28 100.0 32 ............................ TGACGATACACCAAGCGCGGATCTGTCAGCCC 55215 22 78.6 0 ......................------ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTTGCTGCCGCACAGGCAGCTCAGAAA # Left flank : ACCGGCTTTGCTGGGTTTGATGAAGCACGCCTGGCTTCAAGGCATGCGCGATCATGTGGCAGTGACGGCGGTCGGGTTGGTACCGGCTGGAGCGACGCATCAGATCGTGCAACGCCGTCAGTTCAAGACGAATGCTGATCGCATGCGCCGCCGCCGTATGCAACGCAAGGGCGAAAGCATGGAGCAAGCGGCCGAGGCAATTCCCGATAGCGTTGAGCGAACGCCGAATCTGCCTTACGTACAGATACGAAGCGCGAGTACGGGGCAGCCGTTTTGTTTGTTTATTGAGCAGGTTGGGGTGCCAGCAGGAGCGTTGGGACCGTTTAATCGTTATGGGCTGAGTCAGGGAGCGAGCGTGCCATGTTTCTAGCCCCTTTTTTCTGGACTGGTTTTAGGTTGTTGGTAAATCAATGAGTTAGCGATGAGGCGACGATTTGGGTAAATTGCAGGGCCAGTCGGGATATTTTTTGAAATCAATGCGTTAAGGCAAGGTTCGTCTA # Right flank : | # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 56456-57338 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBTY01000194.1 Caballeronia sordidicola strain PAMC 26510 contig-2000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 56456 31 100.0 32 ............................... ATCATCTCGTCGAGCAGCGGCTCCGCATCGTC 56519 31 100.0 34 ............................... TTCATGTAAGCGGACCACTCATCGCCGCTCTTTT 56584 31 100.0 33 ............................... GATATTCGGTGCCGGCGTGGTTTCTGGGGACGG 56648 31 100.0 35 ............................... AGCTTGAGGCCCCTATCTATATGGGCGTTGAAACC 56714 31 100.0 36 ............................... AGCTTGCCTGATATGTGAGTATCCGCCGCCTCCGCC 56781 31 100.0 36 ............................... GATGACAGTGACCGGCGCGGGAGTGGCACCAGGCAC 56848 31 100.0 35 ............................... GTCGACGGCCGTAGCCGGGTTGATCTTGCCGCGCT 56914 31 100.0 35 ............................... GTCCAAGCGGTCGCCAGTCTTCAACGTGCCAAACG 56980 31 100.0 34 ............................... TTGCATCCAAAGCCCGTTGAGCCAATAAGCCGAC 57045 31 100.0 34 ............................... GCAAGAAACTCGCGCGGCTCCACCGGCGTGAGGT 57110 31 100.0 35 ............................... GACACAGTCAGCAAACTAGACGTCACGCGCCCGAG 57176 30 96.8 0 ..............................- - Deletion [57206] 57206 31 64.5 4 CG.TT.AT............C.C..C...CT GTGG Deletion [57241] 57241 31 100.0 36 ............................... GCCGCCCGCAAAAAACAAGCTGTTGATTGACTACGA 57308 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 15 31 97.4 30 GTCGCGTCCTCACGGGCGCGTGGGTTGAAAC # Left flank : CGTGCACACGATGCTCGTCCATCGATGGACGAAGGACCAGGTGCGGAGGGATTGGGGGGTGAGCATGAGGCGAATTGCGGTTTGTTCTGGTTGGGTTGCTGGGCGAGTGGGGCGTTGGACGCGTCCAGTTGGCGTCTAAATGAGAATGATTATTATATACGCGGGCGACCCAGCCTTTCGGTTTGCTTAATGGTCCGGAGAACGAAATTGCTTGGGGTAATATTCGGCCGGGTTTGTTGGGTGATTTATGAGGCGGTTTTGTGGCGTTAATGTGTGGCGGGGGCTTTGAGTTGGGTCGATGAGACTGGCAAGCGCGAACCAGTAGCGACCGGTCTTTTACGGGGAGGTTCGCGGAATGATAGACGCTATGATTCGTAACTGTTTTATATGGATGAGGCGCTGGCTGTGCAGTTTCTTGGCGATGCTAAGCATCGTTTTGCGGCAGGTTCGCGGAACGAAGGTGTTGGTGGCTTTGAAAACAGTAGGTTACATGGGATGAA # Right flank : | # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //