Array 1 2905-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFCK010000013.1 Ruminococcus callidus strain MSK.21.81 EBJNMNME_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2904 32 100.0 35 ................................ CCGGTATGCTCCGGGATTCCGGTATTTCTCACAGC 2837 32 100.0 34 ................................ GCTTGCCTCGTCCAGCTGAGTCTGTACAGCTGCG 2771 32 100.0 33 ................................ TCGTCTCGCATTTTGATACACGTTTATTTTGTC 2706 32 100.0 34 ................................ AAAATATATCACGCCGGAGATGTGCGACGAGATC 2640 32 100.0 33 ................................ AGCGAGATCAGGAGCCATGTCATTGAGTCATAT 2575 32 100.0 34 ................................ CTATATCTGCCGCCATGTTGTCCAGTCATTGCCA 2509 32 100.0 34 ................................ CTCTCCCGGTAGACGTTAAAATAGATAAGCAGCG 2443 32 100.0 34 ................................ AGTGAGTTTGCAGACGCTGTCTCAATCCCTGCCC 2377 32 100.0 34 ................................ GTCGTACCGTACGCCATACCACACAGAGAGATCA 2311 32 100.0 35 ................................ TAACGGTTACGCCCCCAAGAGTGGAGGTTTTGTCG 2244 32 100.0 34 ................................ CGACGGCTTTGAACAAATCACCGTGCGCCGAGGT 2178 32 100.0 34 ................................ GTGGTGCTGGTACAGTCGTTGTCACCGCACAGGC 2112 32 100.0 33 ................................ TGATCTGTATCGACTCTTGCAGCGTCACTGTGT 2047 32 100.0 34 ................................ CAGCAGATAATCGATCAGGGAGTCAATGATTTGC 1981 32 100.0 33 ................................ GTTGACCATAAAAGCGATGCACACAGCGTCGCG 1916 32 100.0 34 ................................ ATGCTAAGGGCGTACTTGACACTACCCAAAAAAA 1850 32 100.0 34 ................................ TCATATGATTATCCTCCTATATCTGCCGCCATGT 1784 32 100.0 35 ................................ TTGCGTTTGCAGCGAGTTGATCTGCGTCTTTTGCA 1717 32 100.0 34 ................................ GAATACTATTATAGGAGAGCAAAACAAAAACATG 1651 32 100.0 33 ................................ TTGCTGTACCTGTGCTCTCAAAACGCGGAGATC 1586 32 100.0 35 ................................ TTGCTTTTTCCTGTATCAGCGGCATGTTGTTTTGG 1519 32 100.0 34 ................................ GATAAGCCAAATGAGATCATGTCGACCTCTGACT 1453 32 100.0 35 ................................ ATTGCAAGAGGAGTTGCCGATTTATGGAACAACTC 1386 32 100.0 33 ................................ AGAAATGCGCCCGCCGTGACCGCCAGAAGCGTC 1321 32 100.0 34 ................................ ACGGGCAGAGTACAGCACATGATTTACGTCCGGA 1255 32 100.0 35 ................................ TGGAACGGTATTAACGACATGGTCGGATGGATTGG 1188 32 100.0 33 ................................ GTAATCGCCTGAAACGGCGCTGTGCTGCCGTCT 1123 32 100.0 33 ................................ TTTAATTTTAGTTAGTAAATAACCCTAAAAAAA 1058 32 100.0 34 ................................ ATTCAACAAGTAGACGTTTCCAAATTGAACGAGG 992 32 100.0 34 ................................ GTGATTGCAAAAACTCTCGGATACGTTGACGGAG 926 32 100.0 34 ................................ ATGTGAAGTACCACTACGACGACAACGACGGTTT 860 32 100.0 35 ................................ CAATGGGAGTTAAGGTTAATATATCAAATGATACT 793 32 100.0 33 ................................ GGTGTCATCAAGAAATGGGATTATCTACAGGAG 728 32 100.0 35 ................................ GGTGATGGAAAAGCAAGTCGGTAAATTTTTACCGA 661 32 100.0 36 ................................ ACCGAGGATAGCGGAAACTACAATATCAGCTTTGCG 593 32 100.0 36 ................................ CTAATCACCTCGTACAATGCATTTCCGTTCTTGTTT 525 32 100.0 35 ................................ CAAGCAGATCGCAATCCAATATGCCCAGGATGTCG 458 32 100.0 35 ................................ AATCAGCTATCAATTCACGGATGCGGATGGAAAAC 391 32 100.0 35 ................................ TGTAGACATGTGCTTTTTGTTTTCGGCGGATTGGG 324 32 100.0 35 ................................ TGCCGGAATGCTGTGATAGGGGCGAATCTGGATGT 257 32 100.0 34 ................................ TGATACAGCAGAGCGTATTCCTCCATCGTCAATT 191 32 100.0 36 ................................ AAGCCCAACAACTTTGAACTGGGCGAGATCTTCGGC 123 32 100.0 35 ................................ TTGCATCCCCTCCTATTCAGTTTTTGGAGCCCCCC 56 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 44 32 100.0 34 GTCACGCCCCACGCGGGCGTGTGAGTTGAAAT # Left flank : GAAGAGTATCCTTGTTTTCTGATGAAGTAGGTGATGTTGGTTGATGGTGCTTGTAAGCTATGATGTGTCTACAACAGATGCCAAGGGAAGAACGCGGCTCCGAAAGGTGGCAAAAACTTGTCAGAATTATGGACAGCGCGTACAGAATTCGGTTTTTGAGATAGATGCAGATTATGGTACATTTTTAAGAGTCAAGGATCAGCTTTTGAAGCTGATCGATGAAGAAAAGGACAGTCTGCGGTTTTATTATCTGGGGAATCATTGGGCAAGGCGCGTGGAGCACTTCGGCGCGAAAGAAACCTATGACCCGGAAGGCGTACTGATTATCTGAGTGTTTGGCTGAAACTTATTCTGGCTGCGAACCGCAAATAATCTGAAATTCCGGAGCACTTCGCAAAGGAAAAGAGTAAAATAAAAATATTTTATGCGAAATTGTATGATTTTGCATAGGATAATCCGCTCGCGTGATAATTTTGTGCCTCTTTGACACAACATCTAGG # Right flank : TTAACAACTCAACATTTTCAGGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCACGCGGGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26-1783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFCK010000053.1 Ruminococcus callidus strain MSK.21.81 EBJNMNME_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 26 32 100.0 35 ................................ ATGTGCCATATTGTATACCTCCTTGGTCTTTTCAC 93 32 100.0 34 ................................ TGCCAAGCGTTGCAATCGCCTGAGCAGGCGCTCC 159 32 100.0 37 ................................ GATCATATCAAAGAATTGCCCAGCAAGATGTTTAGCG 228 32 100.0 36 ................................ TGAAAAGCTGGGCGTATCCATGCAGGACATGGACAG 296 32 100.0 33 ................................ TTTTGATTGCCTGGTACAGCGTCGGCGCTGTCC 361 32 100.0 34 ................................ GCCGCTTACCGCCGCGTTTTTGCACGTGTTATTT 427 32 100.0 34 ................................ CATTGTGTACGCCGGCAAAAAATACACAGAGTAC 493 32 100.0 34 ................................ ATCGCAGACTCCGGCATAGTCGCCAGCAGATAGT 559 32 100.0 35 ................................ AATATGCTCCAGCCCGTCAATGGTCACGCCTGTCT 626 32 100.0 34 ................................ CGGAGAGGGCTGGATTATGGACTGGCAACCGGCG 692 32 100.0 33 ................................ ACGCTCTCCGGCGCGCTGCATTTGGCTAACCTC 757 32 100.0 37 ................................ CGCTGGTACAGGTAGCAATACCCGCCGCCCTTTGCCC 826 32 100.0 33 ................................ TGTGTGGGGATGATTAGGGCACAGCGTGCCAAT 891 32 100.0 35 ................................ ACGCTTGCCGCAAAAGTTGACGCTGTCCACAGCGC 958 32 100.0 34 ................................ TTCTGGAGACGCTCCCAGCGCCACTACATAAGAG 1024 32 100.0 33 ................................ TGTGTCCAAATCAGCTTTTTGGCGAGATACATG 1089 32 100.0 34 ................................ CGGCGTGATATATTTTGAGATCGCGTCAAAGACG 1155 32 100.0 33 ................................ ATTTAGCGGCGGCTTGACATGATGCGGGACTAT 1220 32 100.0 35 ................................ TTCGCCGTCCGCCAAAGTGGAGAAGACCGGCAGTG 1287 32 100.0 36 ................................ TGCGCTGCTGGCAGGCGTGTTGTCCGTGCTGACAAG 1355 32 100.0 35 ................................ TGTGACGGTGGACAAAAAAGTCTACCGTGCAGACG 1422 32 100.0 33 ................................ CCATGGAGGCATGCGCAGACGGCACCGCACAAA 1487 32 100.0 33 ................................ TTGATGTGTATTTCCGGAAGCCAAGCCAGCGAA 1552 32 100.0 34 ................................ GATTAGAAGTTGTTAGGGTAGATACAAGTTTTTT 1618 32 96.9 35 ..............A................. TCCAAAGCGAACTGAAGGTAAACACGAAGCTGAAA 1685 32 100.0 35 ................................ CGTGTTTTATTTATTCGGCTTGTGCCGGACGGGGG 1752 32 93.8 0 .................T....A......... | ========== ====== ====== ====== ================================ ===================================== ================== 27 32 99.7 34 GTCACGCCCCACGCGGGCGTGTGAGTTGAAAT # Left flank : GTCAGCATAGACGCCCTTGACCGCCG # Right flank : TTGTATTTACAGAGATCGAGACCTGCAAATAAAAGTCAAGCCACAATACAGTGAATTTACAAACAATTCACAAGACAAAAAATGGCATGACAGAAAGGCCGCTTCCAACTTAAAAAAGAAGCAGCCTGATGAAAAGATGCGTAGAAATATTACATCGCATTCAAAACCTGATTCACTTTGGCATAGTATATTCGCAGGAATTTGTTTGCAGCAGCAATTCTGTAGGCTTTCCTTCAGAGCGTTTCTTGATGATGAACTGATACACCGGTTCATTTTCCGGTTTACTTAGGATAAATATTTCGGTTATTTGAAAGAGAACTTTTCTGAGAGTTACAGAACCACGTTTGGAAATATGCCTGGAGGATACATCAAGCTGTCCCGGCTGGTACGGCGGAGCATCAAGGAGGCGTTGTCATGACTTATGAACAGATCAATGAGATGATGCAGGAGATGGAGCTTCCCTTTGCCTATCATCATTATGCGGAAGGCGAATCGCCTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCACGCGGGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFCK010000150.1 Ruminococcus callidus strain MSK.21.81 EBJNMNME_150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1 31 96.9 34 -............................... TAACAACTCAACATTTTCAGGGTCAAGCTTCAGC 66 32 100.0 34 ................................ AAACAGGCGGCGGCAACTGAAAAGGCGTTTTTGA 132 32 100.0 34 ................................ AAGTCTCTGGCGGTTATGTTTGGCGGCTCTGCCA 198 32 100.0 35 ................................ CGTTGTACCATTGCTTTGCAGCATATGGCGTTTTC 265 32 100.0 34 ................................ CCCAAAGTTGTCAGCATAGACGCCCTTGACCGCC 331 30 93.8 0 ..............................-- | ========== ====== ====== ====== ================================ =================================== ================== 6 32 98.4 34 GTCACGCCCCACGCGGGCGTGTGAGTTGAAAT # Left flank : | # Right flank : | # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCACGCGGGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24483-26607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFCK010000021.1 Ruminococcus callidus strain MSK.21.81 EBJNMNME_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 24483 33 100.0 35 ................................. CCTGAAATACCATGTCATAGTTCTTGTCCATCCAT 24551 33 100.0 35 ................................. CTTGCCGAAGATCATCAGCAATCCAGCACCGATAC 24619 33 100.0 35 ................................. ATTGCTACAAACTATCAAGGTGTGGGTGTGGGAAT 24687 33 100.0 35 ................................. ATCCTGTGCAAGCGCGGCGTCGATGGCGTCAAAAA 24755 33 100.0 34 ................................. GGCATCGTTATAACTGGGGGGTCGTGCCGTGGGG 24822 33 100.0 35 ................................. TTCCGGCGTAACTGCGTAAGAATACCAGTACGCTC 24890 33 100.0 35 ................................. CGCAATCCAAATTGGAGGATTCCGACGACTGGAAC 24958 33 100.0 35 ................................. TTTTTCCTCCTGTTCTAAGTCGAGTTGCTCCGGAT 25026 33 100.0 35 ................................. TTTTTGCTCCGGAAGCCAAAGTTGTGAAAGGAACG 25094 33 100.0 34 ................................. ACTTTTTTTTAGCTCAATAAAAAAGAATATATAT 25161 33 100.0 33 ................................. AGCATCCACAAGGCATAGTAGCACGCCAACGCG 25227 33 100.0 36 ................................. ACAATTGTTTTGGTGTCTGATAATGTAGATGACATG 25296 33 100.0 35 ................................. CTAAGCTGTATAAGAATAAGAAAATTGCTGAACGT 25364 33 100.0 35 ................................. AAGCGTCAATTTAACTCGATCTGCAATTTCCGACA 25432 33 100.0 35 ................................. TCTATGTTTTCATCATGTCCCTGACGAACTTCCAG 25500 33 100.0 33 ................................. GGATTTGTTGCTGAACTCGTAATAATGGACGTT 25566 33 100.0 35 ................................. TCAACGTGTACTAAAAATTGCAACAGGACAACAGC 25634 33 100.0 35 ................................. CGAGCAAAAATTCCACATTGCAGAGCCGCAGCATG 25702 33 100.0 34 ................................. CAAAGACTGCGGGTCAATGTAGTGAATGGTATTG 25769 33 100.0 33 ................................. CTCGATTCATCGCCAATGTTGCCGCGGTACGTC 25835 33 100.0 34 ................................. CTTTTCCGTGTAGGATTCTGTGCCAGTGTCCTCT 25902 33 100.0 36 ................................. CTAAAATGGACGGCTCCGGCGTTTATCAACGCCTCG 25971 33 100.0 33 ................................. ATTTTGTGCAAATAGACGAAACGACCGACACAA 26037 33 100.0 34 ................................. ACCGCATCCAACAAATCGGATACTATTACATTTG 26104 33 100.0 33 ................................. CTGCGATATAAGCGGCTCGTGCAGCCCTCTTAC 26170 33 100.0 34 ................................. TTCGTGCAAGCCCTCTGCAACCCTGCGAAAGAAG 26237 33 100.0 36 ................................. GCGCTTGATTAGATACCCGTGATCCCGCAGCCATGC 26306 33 100.0 36 ................................. CGCGATACCATCGAGCCGGCCTTGCCGCATTGCAAG 26375 33 100.0 33 ................................. CTGCGATATAAGCGGCTCGTGCAGCCCTCTTAC 26441 33 100.0 35 ................................. CCGTTGCTGATCTGCGCCACAAATCCGCCGCAGCG 26509 33 100.0 33 ................................. AGGATGCGTTGCCTGCCATCATTCCGGCGGGCA 26575 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 32 33 100.0 35 GTCTCCCTCCACACGGAGGGAGTGGATTGAAAT # Left flank : ATCCGCCGTTTTTATGGAAGTGATTGCATGCTGGTGGTTGTGACCTATGATGTCAATACGACGAGTAAAGAGGGGCAGAAACGATTGCGCCGAGTGGCAAAGATTTGTGTGAATGTCGGGACAAGAGTGCAGAATTCTGTGTTTGAGTGCCACGTGAATGCAGCGGAATGCCGTCTGCTCAAACAGCGGCTGACGGATGCCATCGATACCGAGAAGGATAGCCTCCGGTTCTACTATCTGGGGAATCAGTATCAGACAAAAGTGGAACATATCGGCGCAAAGGAAACCATCGATGTGGAGGAACCGCTTTTGTTCTAAGAAAACGCTCCGGTGCGAACCCTAAGCGCACAAAAAAAGCAGGAGGGATTCGCACCCGCTTTTTCGTAAAAAAATCAGAAAAAAAGTATTTTTTCTGACATGGAGAAGTGTATCTGTGTTCTTTTTTGTCAAAATTGCATTTGCTCTGCTGAGTTTTAAGCGGAAAGCTGTGTAATTTTGCT # Right flank : TTGCCTTCTGGCGTGGGGTGTCGCCCTCTGGGGTTTCGTCATTCCTCAAACAGCTCCTCTTTGCCACCGCTTTTCACGCAAGAAAGCGGTGGCAAAACCATATCCCGTCCATTTCATCCGCCACACTTCAAACCACCTTTCCCTACATCCCCAGCATCTGCAACCGCCGGATCAGCAGTGCAGCATCCAGCACATCGTACACATATTCATTCGGAACGCCCGTCTCTGCTGTTTCCAGCACAAGAGACGGGTATTTTTTATGGTAGACATCATACAGGAATTTCCCCACGGCTTTGGAACGTGACTGTCCGGCATAGCAGTGTACCAGCAAGGTATCAACCTCCTGATTCGCATCGGCGAAGTCGAGAATGCGGTCTGCCATCGCGTCCTGAAACAGCACGGTGCCCTCTACCTCTGTCACAATATCATCGAAAAGCAGCGTCAGCACGTCTTTGCAAAAGACGTTTTTCTGGAACTGCACGCCGAACCCTTTGGTGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCCACACGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //