Array 1 272806-273933 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXM01000002.1 Escherichia coli strain MOD1-ECOR27 ECOR27_2_length_353605_cov_129.957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 272806 29 100.0 32 ............................. GTTTGCAAACGCGGTTTGAATCCCGCCGTAAT 272867 29 100.0 32 ............................. CGGATCGTGTGTGTGCCAGCGCTGCGCCCAGG 272928 29 100.0 33 ............................. GGATTTGCGCGTGGTGAACACGGCAACACCTGC 272990 29 100.0 32 ............................. ACCATAACCTGCCCACCCGTTATTTTGTCATC 273051 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 273112 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 273173 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 273234 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 273295 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 273356 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 273417 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 273478 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 273539 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 273600 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 273661 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 273722 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 273783 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 273844 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 273905 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 289436-291173 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXM01000002.1 Escherichia coli strain MOD1-ECOR27 ECOR27_2_length_353605_cov_129.957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 289436 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 289498 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 289559 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 289620 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 289681 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 289742 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 289803 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 289864 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 289925 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 289986 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 290047 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 290108 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 290169 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 290230 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 290291 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 290352 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 290413 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 290474 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 290535 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 290596 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 290657 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 290718 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 290779 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 290840 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 290901 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 290962 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 291023 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 291084 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 291145 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //