Array 1 1097-1988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPE010000013.1 Bacteroides fragilis strain MSK.23.115 JCNDDIAN_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1097 47 95.7 30 ...A......A.................................... TTTATTGGATGTGGAAAACATACAGGGGTT 1174 47 100.0 30 ............................................... GCTTCAGGGCTTCCGTATCTCTAAAGAAAT 1251 47 100.0 30 ............................................... TAGCTCCTTGCAGGTTGGAAACACTTCCGC 1328 47 100.0 30 ............................................... TTCCCGGACGTATCGACGAACGAAAGAGAA 1405 47 100.0 29 ............................................... AATTAGCGAATAAATGCTGATGGCCAGTA 1481 47 100.0 30 ............................................... GCCTCTCGTTCCGGTAGCTTCATTCACAAG 1558 47 100.0 30 ............................................... TAAAATAGTCGGTTCTTATGGATGGGGATA 1635 47 100.0 30 ............................................... TAGCTTGAAGTTGCACCGGTTAACTGTGCA 1712 47 100.0 30 ............................................... ACTCCTATCGCATTAGCTGATCTTATGTAT 1789 47 100.0 30 ............................................... GCCAAAACAATATATGCAATGGCTGAGAGA 1866 47 100.0 29 ............................................... ATAACACTGTAAATCGCCTCGTAGAGCAT 1942 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCCAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGTGTGTTAAATCAAGTAATATGAAGAGAAGAAACAAGAGGAGAAAAAGGGTTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CAGATTTCACATAACATATTGTTCTTCAATAAGTTAAGAGTAAATTAGAAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGTGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 34580-34993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPE010000055.1 Bacteroides fragilis strain MSK.23.115 JCNDDIAN_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 34580 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 34645 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 34708 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 34771 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 34837 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 34902 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 34965 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.5 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : TGTACACGAAGATTCGGGTTCCGTCATAAACGACAGGACCGGAATGGAAGATGGTGTTTCTTCCGGATAAACTGCACGTAATTGTGCACAGTCTTATCACAGACTTTTGGAAAATCAGGATAATGTTCTTTTAAATAGTCGTGGACACGACTGCTGGAAGTGGAAGGAAAGGTGAAGAGTAAGGATACGACGGCCTGCTCATAATTCTGCAGCTTGCACCGGCGTGACTCCTGATACTTCCGGAATAGTTCATCGGAACTCAAAGACTGCAGACGTTTGACCGTATCGCGGGAAACACCAAGACGCTCTGCTGTTCTCGTAATATTGACTCCCCGAGAACGAAGATCAATGATATTACTCCATAAAGTGTATTTTTTCCTTAAATTTTCCGTATCCATAACCTATTAAATAGACTTCGTAATTGGTGTATGTCCGATTACGAATGTTTGATACGGCTAAGGTACTACTCACATCCTTTGGTGAACTTTTTGATTTTCACT # Right flank : A # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 22615-22771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPE010000077.1 Bacteroides fragilis strain MSK.23.115 JCNDDIAN_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 22615 27 100.0 39 ........................... TGCAGCACATCGTAATATCTTGCATTTTGCACAAATTTC 22681 27 100.0 37 ........................... CTCTTTTTCGTTTGCATCAAGTGCTCTCTTTTATTTC 22745 27 92.6 0 ........................T.A | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 97.5 38 AATTCCATAAGGTACAATTAATACCAG # Left flank : TCAAAAACAATACCTTCCATCGTATCGTCTATCCATGACCAGGTCAGATTATTGGTCTCCGTGCGGTAAGGCTGACTTTCATTTACATGATAATAGGCATAAGTCTCTGCCAGCCGGCCGTTATCATCAAACTTCAACGTATGCCGAACCCACTCGTCTACATCATTCTTCTCCGAATCATTCACCCAGGTTTTGCCACAGAGCTTTGCATTGCTATTTCGTAGATAATCATCTGAATAATACTTGTCACCACAAGAGCTTAGGCCTACTATAGCTACCAATAAGAATAGCGTTTTCATAAAATTCAATGTCTTCATAAGTGTCATTTGTCATTAAATTAATAATACACGGACAAATATAAGGATTGTTTTCTAATAAAAAGGAAATAGGATAAATAAAAACATTTCCCAAAGGATAATGGGGATGTTGCTAGCAAAGAAGAAAAAAATCATCCGATAGAGTTTTAAGCCAACCTTTAAATATAGATCTTCCTTAGTCCT # Right flank : CCGGACTTACAGCTGATAATCA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTCCATAAGGTACAATTAATACCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //