Array 1 170964-175387 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRDZ01000014.1 Cohnella phaseoli strain CECT 7287 Ga0244611_114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 170964 32 100.0 34 ................................ TTGAAAGAGATTACCATAGAGCACCTCGTCAAGT 171030 32 100.0 33 ................................ CGCGATGTGCCTTTCCACATGCTCCTTGTCGGA 171095 32 100.0 34 ................................ CTATCCGTACTGATCTTTCCATTTAGAATTAAAC 171161 32 100.0 34 ................................ AACTGCTGATGCGGAGATTTATCGTAACCTCGCC 171227 32 100.0 33 ................................ AACCAACACCTAATGAGCAGTTAATAGAGTTAG 171292 32 100.0 33 ................................ CTCAATAGGTGATGTTAAATCCAACATCGATAA 171357 32 100.0 33 ................................ TTATCCCATGCCTCATAGGTCGGGTCGGTAAGC 171422 32 100.0 34 ................................ TTTTTGTCCGGTAGGCATATCCGCCTCCCCCTCC 171488 32 100.0 33 ................................ AAAATCCGCAGCGCGCGGAATTATCTATTTTTT 171553 32 100.0 33 ................................ CTTATCATCCCACGCGTTACACACGAGGAGGAA 171618 32 100.0 33 ................................ ACGATCGAGCGGGTATGGTGCAGGAATCACTAC 171683 32 100.0 34 ................................ AAAAACAGAGGTTGAACTGACCACGAAAGGAGAA 171749 32 100.0 33 ................................ CCGCTCCGGTTGATTAAAGGCAGTTGCAGGGAC 171814 32 100.0 34 ................................ CCTGTAACAAGATAAACAGTAGCAGTCGCAGATA 171880 32 100.0 34 ................................ GTTCTCGATGTCGGCTTTCCCAAGGCTGTCAAGA 171946 32 100.0 33 ................................ ATTACCCGAATTGGGCAAACCGGATATGGCGGA 172011 32 100.0 33 ................................ GCAGACTGGAAACGGAAGACGCCGGACGAGATC 172076 32 100.0 34 ................................ TCAATTAGATAATTTACTTTACTTTTTTGGCATT 172142 32 100.0 33 ................................ ACTTAATGATGATACTCTTCCCTTTCCAACAGT 172207 32 100.0 34 ................................ TACTTCACGCATGATTGGATCTCCTGAAACGTCC 172273 32 100.0 34 ................................ CTTCCTACGCAAAAGAAAAAGCCGCCTATTGGCG 172339 32 100.0 33 ................................ TAATAAGTACCGAAACAGGGCCGGGGAGCTTTT 172404 32 100.0 33 ................................ CTTTTCCGGAAAATCTGTTGCCGAGGACATTCT 172469 32 100.0 33 ................................ TACAGCAATGGCTCGTTGGAGCCATACTGATGC 172534 32 100.0 34 ................................ TGGAACTTAATATGAAAGAGAAAAAAGAAGCAAT 172600 32 100.0 33 ................................ CATTTAACTAGATTGTAGTATCACATTTCACCG 172665 32 100.0 35 ................................ GCGTTAACATCGGCGGCGGCTCGTCCCCTTCCAAG 172732 32 100.0 34 ................................ GGGTCTGGCAAGTCCCCGATCGCATCCCGTAAAA 172798 32 100.0 32 ................................ TCCGCCTTAACGAATCATCAGCCTGATGTATA 172862 32 100.0 33 ................................ ATGTATTCCGTGTTGAACGCTTTAGATCCGTTA 172927 32 100.0 33 ................................ TTTTACTTAACTAGATTGTAGCATCACATCTCA 172992 32 100.0 35 ................................ TCTCGAGCAGTCTCTCAGGACGAGACGACGAAGCG 173059 32 100.0 33 ................................ GATCTGCCGACGGATCTCTTGCTCGAGATGCTG 173124 32 100.0 35 ................................ TTCGGCTCCCGCACCCACTTTGGCGTGTTTTTGAC 173191 32 100.0 34 ................................ ATCTTGGACGTACTCAAGAGCGGCAGCAAGGTCA 173257 32 100.0 33 ................................ TTGCGCTCTGTAAGCGGCAACGTCCGCAGATCC 173322 32 100.0 33 ................................ TTTGGCCGTTTGATAACGGGCTTTCCCTCGTTA 173387 32 100.0 34 ................................ TGTGGAGGCGGTCGTCATGGAGGAGTTCTTGATC 173453 32 100.0 33 ................................ TTCCGGCTTGTCCACACCTTCCATTGGATTATT 173518 32 100.0 34 ................................ TGCCTCTTGTCGACGGTATCCCAGCTGCCTGCAC 173584 32 100.0 34 ................................ TAACCGAAGATAAACTCCACATTCCCCGGCTGTA 173650 32 100.0 33 ................................ TATCGGCAAAAACTATTAGAGATTATCGGCCAG 173715 32 100.0 34 ................................ CAGACCTACGGCCTGGTGTGGTTAAGCGGGGGGA 173781 32 100.0 34 ................................ CGGGGCTGTCACAGCATCCGTGGAGGACTGGGAG 173847 32 100.0 34 ................................ GGGTCAACATCGGCGGCAGCTCCCCGTCCAAGGG 173913 32 100.0 33 ................................ GATTACGCCTTGAAGCACGATCGCCTTTTCCAT 173978 32 100.0 35 ................................ TACAAAGTGCTTTGAACTTTTTCAAGGAATCGGGA 174045 32 100.0 33 ................................ TATCTCAAGTTTCACGAATGGGGGACGACTAAA 174110 32 100.0 34 ................................ CTAAATACATTATCACACAAGATGGTTTCTCTTT 174176 32 100.0 35 ................................ GTACTCAGTTTCAACGTCACCAACGTCCAAAATGA 174243 32 100.0 33 ................................ CGAAATAAACTCTCCATCCTTGTACAATCGGTA 174308 32 100.0 34 ................................ TTAAAACGAGAGCAGCTTACAGCGTTGAGGAGAA 174374 32 100.0 34 ................................ GACCTAGCTCCCGCAGTATCTTGTGCTGAACCAC 174440 32 100.0 33 ................................ GTTATAGCTGATTTCAATTACGCCCTCATTGTT 174505 32 100.0 34 ................................ CTGACGCCGGTCTCCCGGTCCGCTCCCCTGAGTT 174571 32 100.0 34 ................................ AGTTCAAACGAGGAGGGAAAGGCGATGGCAGGAC 174637 32 100.0 33 ................................ TAAGCGTTCAAGACGCGCTAACCTTCGGTCAGA 174702 32 100.0 33 ................................ ACAACCCCCGTAAGAGGGCAGGAAGCTCTTAAA 174767 32 100.0 33 ................................ TCTATTAACTGCTCATTAGGTTGGGTCATGGGA 174832 32 100.0 34 ................................ ACATATGACGGAACGACAAGCGCCAACTCTGTAA 174898 32 100.0 33 ................................ CAATTCATGATGTTAAAAAGGGCGTTTATCAGG 174963 32 100.0 34 ................................ TTTTGTTCCGCCCTTGACATTAATAAGCCAATCA 175029 32 100.0 34 ................................ CGCCGACTTGTTCCTGACGTTTCCGACGGCCGTC 175095 32 100.0 33 ................................ GTTGAGAACAAGCTCGATATCTGGACGGCGATA 175160 32 100.0 34 ................................ TTCGTCTCGGCCAGTGTCAATGACGAACACGTAA 175226 32 100.0 33 ................................ ACCTGGTCTACGTCACACGCACCAGGTACAGCG 175291 32 100.0 33 ................................ TACGAAAAGGAGAGGTTAAGATGAGCTTACAGG 175356 32 96.9 0 ......A......................... | ========== ====== ====== ====== ================================ =================================== ================== 68 32 100.0 34 GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Left flank : ACGATGTCAGCACCGTGAGCAGCGCCGGACAGCGTAGGCTGCGGCAGGTTTCGAAAGCCTGCTTGTCTTATGGCCAGCGCGTTCAAAACTCTGTCTTCGAGTGTATCGTAGACGCTGCACAGTTTACGACATTAAAGCTTAAGCTCATTGATCTTATCGACGAGGAGACGGACAGCCTCAGATTCTATCAATTGGGTAACAACTACAAGAGCAAAGTGGAGCACGTCGGAGCCAAACAGTCTCTCGATTTAGAGGGCCCTTTGATTTTCTGACAGATGGGGTTGGCGGGGAGTCTATGCTTCTCTTGGTGCTACAATCGGTGCGAATCTCTGGTGCGAATGTGAGGCTCACATGATTTCCCCGGGGGATTCGCACCAGAAAACAGTTAATTTATTGGAATTTAATTTAATTTTCTGAGTGATTATCTGTGAATTAAGTTGATTTACGTGATTTGAAGCAAGAAAATAGGCTGTTTTCGCCTTTTTGTGCTCAAAATCGCT # Right flank : TCTACAATGGAACGTCTTCGCTTAGAGGAAGATGAGAGTGCCCCAATGCCATCGGCGTTACTGATCGCCGAAATAGCATAAGATAAATTGAGAGAAGTAACGGACTATGAAGCCATAGACTGGGAATAATACCGTGGGTGTTGAATTTCTACAAAAGGGAGGCGATTTGGATGGCAATGGACGATCGGCTTTTTAAACAGCGTTCTGAAATGATTAATGGTGTAACCATTATGATGTCACCGCGTCCAGTCGTTAACCATAATAAGATCATCGTAAATTTGTCTATATTATTTGGTGTTTATTTGAAAGGGAAAAGGTGTATCAATCTTTCTGACGGCGTGGATGTTCATCTGGATGAACAAAATAGGGTCGTACCGGATAGCATGATTATCTGTAACCGAGATATCATCAAACGAGATGGCGTATATGGCGCACCTGATTTAATCGTTGAAGTACTTTCACCGTCTACAGCACGTAGGGATAGAGGCGACAAAAAGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 197739-198753 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRDZ01000005.1 Cohnella phaseoli strain CECT 7287 Ga0244611_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 197739 33 97.0 33 ................................G TCCGTCAGAACACCGCATTTATCGGACATGTGC 197805 33 97.0 32 ................................G TTCCTAACGCGCTTTGCATTAGATTATATGAA 197870 33 97.0 33 ................................C GATTCTGCTCTATCCATCTCTTGAACAAAGAGT 197936 33 100.0 32 ................................. TCCTCGCCTTTGAACAGGCTGAATTTGTGTTA 198001 33 97.0 33 ................................C GGCATCTGAAAACGAATCGGCTGCCGGATCGCA 198067 33 97.0 32 ................................G TCCTCGACTGGTCGCATAGGAGGGGCTTTGAT 198132 33 100.0 32 ................................. TCATGCCCTGCTCGTAATTCTGCGAGGCCATA 198197 33 97.0 32 ................................C CTTTGCGGCTTTTGCTCTCAAATGGCTGCTCT 198262 33 100.0 33 ................................. CCGATAAGGGCGGCCGTCCAGCAAGATTACGTA 198328 33 97.0 32 ................................G AAAGAAGGATGGAAAGAGCCGCCCACGGATGT 198393 33 100.0 32 ................................. ATCAGAGAGTGTTTTACAGAGTCTACCAGATC 198458 33 100.0 31 ................................. CGACCTGGCAGATGATAGGCACAAAATACTT 198522 33 97.0 33 ................................C GGTTGATGTCGACCTCCTGTATCGTGACTTGCA 198588 33 90.9 34 .........T..................G...A CGATGCGACAATCAACATGATATTGCGGCGATCA 198655 33 100.0 34 ................................. TGCCGCTCCTGTCAGAGTGCCATAGCCCTTCCAA 198722 32 69.7 0 .G..T.....C...A.C...A.-..AC.....G | ========== ====== ====== ====== ================================= ================================== ================== 16 33 96.0 33 GTCGCATCCCTCGCGGATGCGTGGATTGAAATT # Left flank : TCTGACGGACCGTTAAAGGTAGAGTAGGCGGAGTTTTTGGAGTTGTAAGGGTCTGACGGACCGTTAAAGGTGCAGTCGGTGGAGATTTTGGAGTTGTAAGGGTCTGACAGACCGTTAAAGGTAGAGTAGGCGGAGTTTTTGGAGTTGTAAGGGTCTGACGGACCGTTAAAGGTGCAGTCGGTGGAGATTTTGGAGTTGTAAGGGTCTGACGGACCGTTAAAGGTAGAGTAGGCGGAGAGTTTGGAGTTGTAAGGGTCTGGTGAACCTTTAGAAATAAATTGGTAGGGATGAATCCAAACGGTCCTTAGATTGTTGTTAGTGCGAATTATGGTGCGAATGTGAGGCTCACATGATTTTCCGGGGGGATTCGCACCAGAAAAAGGCGAAATTCCTTGGTGGAAATTTACATTCTGAGTGTGTTAGGCTTGGATTAGATTGTATTTTTGCGTATTTTGGGTACAAAACGGGTGGTTTCTACGTTTGTAAGTCTCAAAATCGCT # Right flank : GCGTCAGCGTCATCGCCAGGAAAATAAAAAAATCCCGAGGCCATCGGTTCTGATGACCTCGGATTTTTTTACCTTCTGACAGTTATCACTCGCAAGCGACTCCGTCGCCGTCCCGGTCCAGCTTGAGGGAGTAGCCCGGATCTCCTTTGCGAAGAGGCGATTTACCGGCTTTGCGTACTTCGGCGCAGCTTGAGTAGACGACGGTTTCCTTTGCGGGAGACGATTTGGCGGGAGGGTTCGCTGTTGCGGGGCTAGGTTGATCCGGGAACAGCTTTTTGGGCTTTTCAACGATGAACAAAACTTTCGTGCCGTCCTCATAAGCCGATAGTTGATGTCCGACCCAGCTTCCCGCGCCGCGATTGTCGCGAGATTCGACGTAGGCGACGCTAGCGCCTTTGCCGCCCTCCTGGCACATAGCCATCGGCCATTCGTCCCGATCGTATCCTTTGCGTGTATCGATGCCGGCCAGCGATTGCTTGCGGTTGTCCCCCGCGCCGCCC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38487-39964 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRDZ01000048.1 Cohnella phaseoli strain CECT 7287 Ga0244611_148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38487 32 100.0 33 ................................ AATTATATCATCAAAGGTGGACGGACGCATGGA 38552 32 100.0 34 ................................ ATATATAAGTCCTCCCATGATGTGATAGAGAAAG 38618 32 100.0 33 ................................ ATTACTGGATGTATCCAACGCAGTCACCGCAAA 38683 32 100.0 33 ................................ ATTAAGCTGATCAATCCATGTCTTTTCATTTGG 38748 32 100.0 34 ................................ ACGCAGGAATGATTTCTTAGGAGAGCCGACTAAC 38814 32 100.0 34 ................................ TAGACCAGAAAAGGAATTTCGCGAAGAGGGTCAA 38880 32 100.0 33 ................................ ATCCGCTACGCTGTTGTGTAGAATCTCGACGAA 38945 32 100.0 34 ................................ CCTTAAGTACGGCAATTGCTTCGTCATCGTGTCC 39011 32 100.0 33 ................................ GACCTTGGTATTCGCTGGCGTATTCGTTGGCGA 39076 32 100.0 33 ................................ GCCCGAATATAAAGGCCGGTATCGTCCGTCTTC 39141 32 100.0 33 ................................ CAGTGCCTTGTTAGCGAGTTTCAACCATTTTTT 39206 32 100.0 33 ................................ GATTCCTACATTCTCAAGTGATTTTCTAAGCAC 39271 32 100.0 35 ................................ GCAATTTCAAATTCTGCTTCGTCGTCAAATGGGCA 39338 32 100.0 35 ................................ AATAAGATTCGTCAAATGATGTTCGCTACAGATGT 39405 32 100.0 36 ................................ GACAACGGGGCCGAAGAACGTGCGAAAGGCGGCTAC 39473 32 100.0 34 ................................ TACAATGCCGAGACCAATCAGGCGCTCCGCTTCC 39539 32 100.0 33 ................................ CTCCGCCGAACTTCGGCAGCTTACGCATGAGCC 39604 32 93.8 33 ...A.....T...................... AGTATGCTCAGCGCGCGCCTGGCGTTAAATCGG 39669 32 93.8 34 ...A.....T...................... ATTGCACTTAATTCGGCAATGGACCCGATCGGGT 39735 32 96.9 33 .........T...................... ACACACTGGGTCACTCGTCTCCTTGCGGAGAAG 39800 32 96.9 35 .........T...................... ATTTTGTTCATCAAGCTTTTGGCGATGGAAAGCCC 39867 32 100.0 34 ................................ TTCGGCGCGACGATCAGCGTTCGGCGGATCTCAA 39933 32 87.5 0 .........T.........CT.........T. | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 98.6 34 GTCGCTCCCGGTACGGGAGTGTGGATTGAAAC # Left flank : TATCGAAAAATTCGCTGCTGATAAGCTTCAACCAGCCTGCCGTAGCTTTCCCTATCTCCTTGCTTAACTGCCTTTACAATTTGTTCCGCCTCTGTCCGTTCCACGCGCTGCCTCCTTTCTCATTGAATTGATTCGTTTATGTAACAATCTCGCTCACGTTTTTGGGACACCCTCGTCTCTGTTTCTTTTAACACGGCATAGCTTTGCACCCCAGAAGTATATCTCCCACAACCCTTTAGGAAAAGCTTATAATAGGATTAAAAGTTCGCATCAGCTATTAGGCCGACCATTTTCCATAGTGAATTTGTTAGATTGTTACTTAAAGCTTCTGTAGTGCGAACCCCAGGCTCACATGTTTTTCCTGGAGCATTCGCACCTCTTACATAAGAGGGATCAAAGCTCTTCTGACCTATTTTCTCATTTACTTTTCTCGCCAATTGTAACGATTCGCACTTTTGAGCCTCTAATCCCTTGCCCCGCAAGGGCTCAGACTGTTCGCT # Right flank : CCGGAGAAGTTATTGAATATTATTAATAGAGGAAATTCACTCCCTGTAAGGTAACACGTATCTAATCACGGTCACCTATCTTCCTTATAATATGAGTGTGAGATTATCTTTCAAGAATTGATGAAAGAATGTTAATTGTGCCGCTTTAATAGAGGATTAACTTAAAACAAAATGCGCATTATAATTTGTCTTTAGAGTTTGCAGTCTCATCCTTCAATTAAGCATAAATTTATTTAACAAAGGTAGTTCATCTAGAATATACCAGTCAGTCACTCTGGGCCCAAACACAGATCCACGCCGCTTCATAAGTTTACTAACCTCACTCCTTTTGAAAAAGTCACAATAAAACTCTTTAATTAACAAATATGAATCCCCAATTTATTGACTTTGTGAGGTGAACTCTATGTTTGATGTCATTGATCAGAAAAAACAATTGCTTGATGCCAAGAGATCCTTCCCCCCTCACACTTTACAAAGCATCCGCGAGCATCTAATCGTCA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCGGTACGGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 41260-42477 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRDZ01000048.1 Cohnella phaseoli strain CECT 7287 Ga0244611_148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 41260 32 100.0 33 ................................ TTTTTATGTGCTTCGTGCAAATCATTAGGGAAA 41325 32 100.0 34 ................................ AGGAAAGCGACACAGAGCATGGATTGGTTGGAGA 41391 32 100.0 33 ................................ TCCGGCCGCAATTGCAAAGCCATAAGCCCGCCT 41456 32 100.0 34 ................................ TTAACATGGATCGGGTACTCTTCCGGCGGGATCT 41522 32 100.0 34 ................................ ATAATGCTCGATTGATTGTTGTAGCTGATCGTGG 41588 32 100.0 33 ................................ TCCTTTGCCCGATTGGGCTTGAATAGTACCAAG 41653 32 100.0 34 ................................ AGATCGGAGTATACCCTACAAGCTTCGGTAAGTG 41719 32 100.0 36 ................................ AAGCGTTTTGATCCATGATCGGACCGTCTTATCCGT 41787 32 100.0 34 ................................ TACGTATGGTTGAAGCTCGGGATGATGCTTTGCA 41853 32 100.0 33 ................................ TTCTTGACCCTTGGTGTATCGAAGCAGTTGCTC 41918 32 100.0 34 ................................ CGAAAACCCATAGCAACGTACAAATCTGACTCTT 41984 32 100.0 33 ................................ GCACTTGAACCTTGTGTGAACAGAGGGGAGTGA 42049 32 100.0 34 ................................ TTGAACTCCTCCTTGGTGATCCGTCCCAGCGCCA 42115 32 100.0 35 ................................ TTTAGCCTATCCTCAATAGCCCCCAGCGCCATCCG 42182 32 100.0 34 ................................ GGCCTCTGTGAAGTCGCTGCTGGCATTATAGGTG 42248 32 100.0 34 ................................ ACGAAATATGGTGGAACTCAATTCCTGAAGGCGA 42314 32 100.0 34 ................................ TATGCTTGGCATCAGCATCCCGACTACCGCCTCG 42380 32 100.0 34 ................................ AAGCAGCATTGGAACAACTGCTGTGGTTTGTGGA 42446 32 81.2 0 A.....T...C..TA...........C..... | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.0 34 GTCACTCCCTATGCGGGAGTGTGGATTGAAAC # Left flank : TGTAGCCAGGTTCCTGAGTTGATGATTCATTTTACACAGTGGCTTGAAAACGAGGGGGCAAGATTGCACCCAATTGCCCGATCAGCCGTTATCCATAGTGAATTTGTAAAAATTTATCCTTTTGTAGATGGCAATGGCCGTACCGCCCGGCTTCTGTTGAATTTTGAACTGATGAAAAACGGGTACCCACCAATTGTTATCGAAAAAGAACAAAGACTCGCCTACTACACCGCCTTGGATGAAACGCATGTGACGGGTGATTTCACTAGCTTCATCAACTTCCTTGTCCCAATTGTAGATCAAACATGTGATTGGTACTTGAAGTTGCTGTAGTGCGAACCTCAGGCTCACATGTTTTCTCTGGAACATCCGCACCTCTTTTCTCAAAAGGTCTCCTCACCCTTTGGGTACGTTTTCAAATATACTTTTTACTCTAATTGTAACGATTCGCACTTTTGAGCCCTGAATCCCTTGCCCCACAAGGGCAAATTAGGCTCGCT # Right flank : CGGAATCAAAATCGAAGTCATGCAGGTCCATGCCGCCGAGCCACCTTTGCAAAAGTATAGACTGGACACTAAATCTTCGTATTGTTGATTACCTAACGTGTAAAATATTAACAAACACTTGCAACTAGGAGGATCACATGATTATTCCCGGCAGGTCTATAGTTTGCTTCGTTTTTGCTATTTTAGTTTTTTTGTTTGTGTGGCTATCTCCCCGGTCAAAAACTTTATCTAAAAATCACTCAGACTCATCGAGGCGTACAGTTAAGTTTAAACTAATTCCGGCCGGCATCGTTCTTTTATTTATGGGTGTATGGGAGATACTTTATCCCCTCGAATAAATACTTTCCTTAAAGTGGAAGACGTTTCAAACCTATCAATCTCCTCTCACAAAATGGGGCGTTAGTTCATAAGTCTATCAATCCCCTTAAGGAATGTGGATTGAAACCCAAAGAAGAAAAAGAGAATGTACGAATGGCAAAGACGCCTCCTTTGCGGGACTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTATGCGGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 53387-54798 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRDZ01000048.1 Cohnella phaseoli strain CECT 7287 Ga0244611_148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 53387 32 100.0 33 ................................ TGCCATAGTGAGGTCTTTAGCGCTTGTCTTAGG 53452 32 100.0 34 ................................ TTCAAAGAGGAGCAGGTTCCGGGCCGCTACGATG 53518 32 100.0 33 ................................ TATTTCGCCGCAACTTGCCGGTTTGTCGCCGTT 53583 32 100.0 33 ................................ TCCCGATTGAATAGCATCATAGAGATTTTCTAA 53648 32 100.0 34 ................................ TGCTCTTATCGGTGCTGATTCTCAATTCCGATCG 53714 32 100.0 34 ................................ TACTTCGTTATCTTGGTCTTGCGACCTCGATTGA 53780 32 100.0 34 ................................ CATTGGACGTTTTTTTGCTGCGCAAAAATCGCGG 53846 32 100.0 35 ................................ CCGGTCGCCGTGGCCGGGTACGTGCTTATCCGCTT 53913 32 100.0 34 ................................ AGAAATAGCAGGCTGTTCCACCTGCTGCGACAAA 53979 32 100.0 33 ................................ ATCGTCTTTAAACAAGTCCTTTGCTTTGTTTAA 54044 32 100.0 34 ................................ GGGATTACCTGCGTCCTCCGCGATCTCCTGAACC 54110 32 100.0 34 ................................ CACCTGTACTAGTCCCAACCTTTAACCCGTAGCT 54176 32 100.0 34 ................................ CACCTGTACTAGTCCCAACCTTTAACCCGTAGCT 54242 32 100.0 34 ................................ CACCTGTACTAGTCCCAACCTTTAACCCGTAGCT 54308 32 100.0 33 ................................ CGTTTGTCCCTTATCGGATCAACGCGCATCTGT 54373 32 100.0 33 ................................ TCTCAAATCGGGGTCGTGGATTCGATAAGACAA 54438 32 100.0 33 ................................ TCATCGTAATCACTCCTTCGTCGCTTTGAGGTA 54503 32 100.0 33 ................................ CACCAAAGCCGTAATGGCGGCGGGCAGCGCGAA 54568 32 100.0 33 ................................ AACAGGTCGCGCAGAAGGTCATTACGTTTGTGA 54633 32 100.0 34 ................................ GACGCTGAATACGACACGGCGCAGCAAGCCGCTA 54699 32 93.8 35 ........C.............A......... GGTAGCGCGGACTTGGGCGGACTGATCGATACTCC 54766 32 81.2 0 ........C................AAAC..A | A [54789] ========== ====== ====== ====== ================================ =================================== ================== 22 32 98.9 34 GTCACTCCTTTTACGGGAGTGTGGATTGAAAC # Left flank : GTTTGTCCGAAAAACCGTACAACGCAATCCGAATCAGGCTCAAACGACGGACGTTTGTCCGAAAAACCGTACAAAACGACCAAAATCAAGAATTGCATGTCACTAAAGCATCTTGGATGATTAAACGTATAAATTCTGGGATTTATCCGCCACAAAACCAAGATGCCTTGCTATCCTTAACAGCACATTTCATTAACAGCTCCATCGTTTCATACGACTTCCTTCTTCCCTTCAGTTTAAACGTCCTACCGTGCTATTAACTTCAATGTAAATGAATGTCTAGCTTTAAGTATTGGAGAATAACACTTCCTGAACTATACTGAAAATATCTGGTGCGAACCCTAGGCTCACATGTTTTTCCCGGGAGATTCGCACCTCTTACCGTGCAAGGCTTTTCAGCATTTCGAGCTAATTTAAAACTCGCTTTTCCCCATCAAAAATGCTGAGTCGCACTTTTGGGCTCTAAATCCCTTGCCTATCAAGGGCTCAGCATGCTCGCT # Right flank : AGGAAATATTCTCCTCTTCCTATTAATGTCCCTCGTTATTTTACCGAAACCTTGTCCCCAATCAGATCGTATTCTTTATAACGATATTTTTTTGGAGGATATTGCCATGAATTACGGAGTTTACGGTATTTTTATATTTTATGTTCTCATTTTTGTAGTACTAGGAATTATAGCTGTTAAAATAGTTAGAAAAAGGGAGCTACCAACCTCTCATTACACTCCGTTTGATTACATAACAGCCCACACAACAGCTGAGTTCCATGAAGAAAAAGAAGAACATGAAGATGAGGATGACCAGGGTGACGACAAGGATAAGTTTCGATACAAGTTGAAATAGGGATGTACTCCCGGCGTATCTGAAGCAATTCTGAATAAAGTCTGCCTCTGCTTGAAGCCGCTACGGTCGGGTTGCAGCTCCGTTACTTTATGTTTCTTACTCTAACCCGACTCAGTCTGCTTGCAGCCCCATCGATCCATCATTTACCTCGCTAACCTCACTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTTTACGGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //