Array 1 423671-423154 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK020676.1 Pseudomonas stutzeri KOS6 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 423670 29 100.0 32 ............................. CATGGTCAGTATCTCGGTGACCGTATCTTCCC 423609 29 100.0 32 ............................. TACTACATCTTCATTGAACCAGGCGTGGCCGT 423548 29 96.6 33 ............................A GGCCATCAACGCGGGGCGCATTGAGGAAGGCTG 423486 29 100.0 32 ............................. GGGAATAAGCATGAGTTTTTTTGATGAAGTAA 423425 29 100.0 32 ............................. GGATGCGGCGGGATGTTATGCGGGGTGGACAG 423364 29 100.0 32 ............................. CCCTGGGCGGCGAACAGTTCGTGCGGCTCAAG 423303 29 100.0 32 ............................. GGTCGGCACCATGCTCGCCAGCAACTGGCTGG 423242 29 100.0 32 ............................. ACCGAGGTTCGATTCACGCAGCGCCGCCGGAT 423181 28 86.2 0 ...........T.....A..-....G... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.1 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTGATTCTGCGCGAGCC # Right flank : GCGACGGCAAGCGCCTGGCGGCCTATACCATCGTGTTCCCGCACTCGCAGGGCGAGCCGGCGCAATTCCAGATGTGCGGCCTGCGGGTCAAGTGTCAGTGAGCCGCGCGTGACGCGAAAAGGGCTGACACGACTGCGGCGCTATCGCTGTCATCGAGGAGCAGGCAAGATGCTTCCAACGACTGAACAAGGAATCCAGCATGAATCCAGCCGGTGATACTTTCCGCATTGCCACCAGCGCCGAAGCTGCAGTGGACTACCTTGCCGAGCTCCACGAATCCGCTACCAGGGCGCTCAACCAGGCGCTCAAGCGCTATGTGGCCAGCCGTACCGAGCCGAGCATCCAGGAGCGCAGCCTGTTCCGCTACCCGCAGCTGCGCCTGACCTACGAATGCCACGGCGAGGTGCCGGCTTCGACGCGCGCCTACGCCAAGGTGCAGGCGCCGGGTGTCTACAGCGTGACGGTGACCCACCCCGCGGCGTTCCGCGCTTACCTGCTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 424969-424267 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK020676.1 Pseudomonas stutzeri KOS6 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 424968 29 100.0 33 ............................. CGCACGATCCGTCACAGATCGATTTCAAGTGGC 424906 29 100.0 32 ............................. GCGCGCGAGATCGTCACCGGTGCGTTTGAGGC 424845 29 100.0 32 ............................. CTGGTGACCGAGGAAAAGATCGGGCGAGCCAG 424784 29 100.0 32 ............................. TTGCGTGACCGGATCAAACGTCAGGATATGCC 424723 29 100.0 33 ............................. CCCGTCAATGGTCATAGCGCGCATTTTTGGCAC 424661 29 100.0 32 ............................. CCGTTCTGCACGGCGACTTCGTAGGCGCTGTC 424600 29 100.0 32 ............................. CCCCGGTTGCGTTTGACCCGGACACCACAGCG 424539 29 100.0 32 ............................. GCGAGATGGCCGGCACCGACACCGGCTATCAG 424478 29 100.0 32 ............................. TCGAAGACATAGCAGAGATTTAGAAACGACTG 424417 29 100.0 32 ............................. CTTGCAGGGCGACGACTTCAGCGCCGTCTTGG 424356 29 100.0 32 ............................. ACCATGACACAGAGCGAACTGAACGGAGTAGC 424295 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GGCGCGGATCATCCCACTGATCGAAGACGTCCTGGCCTCTGGTGGCATCAGCCCGCCCGAGGCTCCGCCGGAGTCCGTCCCACCGGCTATCCCCAACCCGGACAGCCACGGCGACGCCGGTCACCGGGCGAAGTAAATGACCTTCCTTGTCGTGGTGACCGAGAACATCCCCCCGCGCCTGCGCGGCCGCCTGGCCATCTGGCTGCTGGAGGTACGAGCGGGTGTCTATATCGGCGACGTGTCGAAGCGCACCCGCGAAATGATCTGGCAGCACCTCGAAGCCGGCTGCGAGGACGGCAACGTGGTTATGGCCTGGGCCAGCAAGAGCGAGTCCGGTTACGACTTCCAAACCCTCGGTTCCAACCGCCGCGAACCCATCGACTACGACGGCCTGAGATTGGTCGCATTCCAGCCACCGCAAGGCTCCGATCTTTAACAAAAAGAATGGTAGATATTTTGTAGTCGATTTTCTTCTTGTAAGACAATCGGTTACGTTTGGT # Right flank : CCGCGCGCTCGGCTGGCGACAGGTTGTCCCACGTGTTCCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //