Array 1 500-987 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SAXY01000074.1 Brachyspira pilosicoli strain PC5538III-hc PC5538III-hc_contig74, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                    	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===================================	==============================	==================
       500	    35	 100.0	    30	...................................	TTTTAGCTAATCCGCCAAGATCCATATCGT	
       565	    35	 100.0	    30	...................................	TTTGCCTTGTTTAGTATCTATACTGCCTTG	
       630	    35	 100.0	    30	...................................	TAGTTCTTAACGAATATTTAGGCGGCGGAA	
       695	    35	 100.0	    30	...................................	GCAATACGGTAATAAGTGCCGATGCTTTAG	
       760	    35	 100.0	    30	...................................	ATTTTTTAGATGAGCCCAAACTTCTACGAA	
       825	    35	 100.0	    30	...................................	TTGAATAAAACAGGCAAATGGGAAGATTAT	
       890	    35	 100.0	    28	...................................	TTAATATAATAAATTATGCTTCATAATA  	
       953	    35	 100.0	     0	...................................	|                             	
==========	======	======	======	===================================	==============================	==================
         8	    35	 100.0	    30	GTCTCGATACCCTACTGTATGTAGGAAAGCGGGAT	                              	       

# Left flank :   TATAGAAAACTTCACCTTTTAGGATACAATCTATACAGACCGATAATGGTATGGAATATACTTATCGCTGTATTAATACTCCTAAAATAAATATTTTTGATGAATATTGTCTTAAAAATAAATTAGAACGAAGATATATTCCTGTAGCAACACCAAGATATAACGGCGTAGTAGAAAGAGTACACGGCATAGACGAAAGAGAATTTTATTCACGATTAAATAAAAATATCACAGTAGAATTATTAAGAGAAAAATTAAAAGAATATACACATTTTTATAACAATCAAAGATTGATTTCTTCGTTAGGTTATATTACAATCAAAGAAAGAATCAAAAATATTATAGCAAGTAAAAGTACAATATCTATGGCTCCATGACACAAAAAATACATAAAACTACTTGAAAAATAATAAAAAATGTATTATAATACGAGCAAGTTCTTTGACATTAAGATATAAAATATATATTAATGTGAAGAAAATATAAAGGCTAAAAAGCAG
# Right flank :  TAAAATAGAATCTCTATAATATGATTCTTCAGGATAATGAATATTTCAGATAAATATTCGTTATCCTGAAAAACTGTTAAATTCGCCTTTCTTTACTCGCCTATAAAATGTAGAATAGGAAAGAAAAATTGATATCTCTGCTCAAGTAATAAACTTGGGCTATTTTTTAATTTTTAAAAGTTTTGACAATTAATTTTTTGAATGATATATAATTTATTTTTTGATTTATATATTTTTTAAAATTTATTTATAAAAATATGTGCAATGATTTTTAAAATAAAAAACCGTCAGCATTCATTAATAATACTAACGGTAATTTTATACATAAGTAAATATTTTTTAAGCAAGTGCTTTTTTAGCTACTTCAACAACAGCCTCAAACGCTTTATAATCATCAATAGCTAAATTAGATAAAGCTTTTCTATCTATTAAAACATTAGCTTTTTTAAGACCATTAATAAACTTACTGTAAGATATACCCAAAGGTCTGCACGCAGCAT

# Questionable array : NO	 Score: 3.26
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCGATACCCTACTGTATGTAGGAAAGCGGGAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:51.43%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-6.80,-6.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.37,0   Confidence: MEDIUM] 

# Array family : NA
//