Array 1 13007-12233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWCS010000171.1 Paenibacillus sp. JW14 637, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================== ================== 13006 32 96.9 35 ...................T............ TAAAGCAGGCGTAATCAAATAACCACAATACAGGC 12939 32 96.9 34 ...................T............ CCAGAAGCTTATGTGAGAGTCTGGCGGAGATCAC 12873 32 96.9 33 ...................T............ TTATACAAGGTCCCTATAACCCGCGCCAGTTTA 12808 32 96.9 34 ...................T............ CTTAGGTTATCACTGATATAATATCCTCTTCCTT 12742 32 100.0 36 ................................ CACCTTATCCTTAAACATCCCCAAATGCCGCGCCAC 12674 32 100.0 34 ................................ TCAATAGTAGAGCATTTAAGTAGGCTTGCCGCTG 12608 32 100.0 35 ................................ GTCTCCCAGGATAAGCACGTTGTTGTCCGTGTCCG 12541 32 100.0 35 ................................ AACGATGAGAAGGCGCAGCACGAGCAGATTAAGAA 12474 32 100.0 33 ................................ TAAGCTCCGGTATTCCAAGACAGGGGCCGAGGC 12409 32 96.9 34 ....................A........... ATGTACTGGCTGTCGGCGAACTGAACCCAACGGT 12343 32 96.9 46 ...................A............ TTCCCGGAGGTGACATCAGTGGACAAACTGGAAACGCGTCGCTGGG 12265 32 78.1 0 .G.........T.......T.C.A..CA.... | G [12248] ========== ====== ====== ====== ================================ ============================================== ================== 12 32 96.6 35 GTCGCTCCCTACGCGGGAGCGTGGATTGAAAT # Left flank : GGAGCGCGTCCAGGTCGTGC # Right flank : TCTATACTATAAGCTGAATCATTTCATTCCATAGCTCACCAGATGGGTGTGAGATACCAATATCTCCGGAAAAATAAAGGGAAAAACACCTGTTAAATCTCCTCAAAACGGCTGATGCTCAGAATTAACTGGAAAAACACCCGTTATTTCTGAGCATTTTGCCTTGAACGGCCTGCAAGTGAAATTTAACTGGAGAAAATACCGTTATTATGCGAATGGTAAATCAATTCGTGCAAATAACAGGAGAAAATCCCGTTAATATCTAAATAAAGTTTTTACTCCAACAAACCACTTTATAAAGCCAATGTTAGGCTACGGTGTGACAGTTACCCGCTTAGAGAATTGTCCTTTGATATTAGTAATGCCTAGTCGACGTTGTCTTATCTTTGTTCTACCCTACACTTCCTCTTGAATATTATCCTACATTCTACTTAGAAACCTCCCCAGAACTCTGCCCCTCAATCTCCGCCTTCTTCCGCGCACGAAAGCGCCGCACTTTC # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGCGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCTACGCGGGAGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 56413-56640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWCS010000185.1 Paenibacillus sp. JW14 665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 56413 32 100.0 33 ................................ ATAGCAACCGGCGAAGTTCTGAAGGCATACACC 56478 32 100.0 32 ................................ GAACAAGAATCAATATATGCCGACGGTCCTGA 56542 32 100.0 35 ................................ AAAACTATTTGAAGGTGACGAGTTTCCGCAACTAC 56609 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 GTCGCTCCCTACGCGGGAGTGTGGATTGAAAT # Left flank : TGGACGAGTATCCTCCATTTCTTTGGAAGTAGGTGTACGATTTGCTGGTATTAATTACTTATGATGTGAAAACATCCAGTAGTGGAGGCCAAAGCCGATTGCGAAGAGTCGCCAAGGTCTGTCAGAATTACGGGCAGCGAGTCCAACATTCCGTATTTGAGTGTATTGTCGATGCGACGCAATTCGCTGAACTGAAGATTAAGCTGAAAAATATCATCGATGAAACGGAAGACAGTTTGCGATTCTATCAACTGGGGAATAACCACAAGAACAAGGTTGAACATGTCGGGATCAAGGAATCCCTCGATCTTGAAGGCCCCTTGATTCTGTAGTGCGAATGTGAAGCTCCCATGAAATCCCCGGGTCCTCCGCACCAGATTCATTACATTATTTGTATAAAAACAATGAAGAAACTGAGTTTAAGATGTTTCTTGTGAGAGGAACAAGGGATTTTTGGTTCATAAAAAGGTCATTTACCCTTTTTATGGGTAAAAATCGCT # Right flank : GCTTGTCGGGGGGGGGGGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 101334-100775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWCS010000201.1 Paenibacillus sp. JW14 697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 101333 32 100.0 33 ................................ TTTGGGGGGCGGGTAAAATGGCAGTAGTGGAGC 101268 32 100.0 35 ................................ CCTTGTAACGTTATCGTCCCGTCTTCTGCTATCGT 101201 32 100.0 33 ................................ AGGTGACGTTTAACGTTCTTGATCCGGATCAGC 101136 32 100.0 34 ................................ CCCAAATTACGCACCCCCTAAAAAGATAATAATT 101070 32 100.0 36 ................................ TGGAGGGCAGCCTGCGGGCGGCTCAGGATAAAGTCA 101002 32 100.0 33 ................................ TCATAACCAATGGCCTCAGCTGTCTTGACGCTA 100937 32 87.5 33 ......T......TA......A.......... GCGGTATCTGCGTATGACAAATCGGGCAATCAG 100872 32 78.1 34 ........GC.T.TA.....C...G....... CGTCAGGATTTGCGCATTTGCTGCGCCTGACTCC 100806 32 81.2 0 .............T..A...AAC.T....... | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 94.1 34 GTCGCTCCCTACGCGGGAGCGTGGATTGAAAT # Left flank : TAATCGCAGCGAATCTGGACGGCGGGTCTTCGACGGTTCTCGTCAAGGACAACGAGATTATCAACAAGCCTTCTTCGCAGTATGGCGAACGTTATCTGCCGACCGCATTTCTGGTCTTTGATCATCCGGATCAGGTAGATATCCCGAATATTTGGAAAGGCCTGGACCCTTCCAAAATCGACGCGGCTAAGAAGCGGACAAAATAATAGCGTTACAATAGTATTAGATTACGCTCCCGCATGGGGGGTGACAAGAGATCGGAGGGATGCCTCCGGTCTTTTTTAGTATTTTTATTAGAGTTCATTTAAAAGGGGGAAGACTCGATGATGCAGTGCGAACCCCAAGCTCACATGAAATCCCTGGGGGATTCGCACCGGAAATATTACATTTTATGTATAAAACATTCTCTTTCAACTAATTGACGTTATGAGTTTTGCGTATTAAAGTAATTTTAGAGATGTTTAAAAAGAGATTATGCTCCATTTAAGTGTTTATTCGCT # Right flank : AATTAAGCTGCATATGCATCTGCCACTCATTGTGTGGCTCTACCGGCGTTCAACTGCTTTCATACTTGCCCCATAAACAACTATACAGAACGCATTAAAAAACAAATATAGCCAAGAAAAAAGAGAACTTGTATAGAGATCGAAGTGTAATTAACAGCATTTTTGTACCTTAAATTCTCTGAAGCTAAGGGTTAGTGGAGATTAAGTGCAAAATTGTACCTTAAATCTTCCAGAATCCCCCTTCCAGCGCGCTTTTTAGAAAAATAGGATACAATATTGCCCTTAATTCCCTCATTTGCTTATATTAAAGAAATATAAGGTACAAAATTGCTCTTAGTTGGGGAGGTTGACCATTTCAGCTGTTAAGTTTACTGCTTTTAATCACATACAGCATCTTATTTCACATGTATCAGTGCAACAGCATTAAAAAGGTATAAAACTGGTAACGTCCCATTAGGCAAACGGGCAGTATTGTGACAAACAACGCATCTGCAACATAA # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 291640-292267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWCS010000220.1 Paenibacillus sp. JW14 735, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 291640 31 100.0 34 ............................... CAGCAGGGAATTGAGTTAGAACGAGAGAAGGAGG 291705 31 100.0 35 ............................... ATAGTTTATATCAAGTCCGTCATAGTCGTAATCAG 291771 31 100.0 34 ............................... GATGGGCAAAAATTAAGTTCGCGAATAGTAGAAG 291836 31 100.0 36 ............................... ATTTTGATAGGAGTCATAGCCGGATCTTCAGCCTCG 291903 31 100.0 35 ............................... TTGCGGGTAATCGTGGAGAAAACAATGCGATTCCG 291969 31 100.0 37 ............................... GGGGTATCAGGAGGCATACCTAACCTATCTGCAAGGG 292037 31 96.8 36 .A............................. CTGATGGCTATGAACGAGAAGCAGGAGCAGATTTAG 292104 31 96.8 37 ............C.................. ACTTTCAGGTGGTCACCAATAACCCGGACGTAACCAG 292172 31 96.8 34 ............C.................. CGAACTAAGCGGATCCAGCGCTGAAGTTATGACG 292237 31 83.9 0 ............C.AA...A.A......... | ========== ====== ====== ====== =============================== ===================================== ================== 10 31 97.4 35 TCGCTCCCCATGTGGGAGCGTGGATTGAAAT # Left flank : ATGGTCGTTATTTATACATTAAGCTGCCCTTGGAATATGTAATGGACTCAGGTGACGTTATTTCCTCCCAAACAGCGGATTTTTAACCGGATTTCTGTTCATAGGGTCTCTGGAGTCCTTTATTTTCCTAAAAGTGGCCGGTCGGAGTCAATAACGTCGCTGGAGTCCGTTACAATACGAAACACGAAGCGAGTACTGATTTTGAGATAGATCGCAAAACAAGGATTTTGAAAAAAGATGGAGAATCTTGAAAGAGGAATATGGCGATGCCAGTCACGCTATCACTCAATTTGCATATGAGGCTATGGACTTTGTACGTTGCAAATGGCAGTGCGAATGTATAGCTCACATAAAAATCCCGGGTCCTCCGCACCACGAATATTACATTAATTGTATATTTTTTTGTTGGTAAAGTGTGGTTTTATCCTTTGGACTGGAGTTAATGAGTAATTTTTCGCCCCAAATAAGGTATTTTACCTTTTTATAGGTGAAAATCGCTG # Right flank : TTGAGCAAATGTCTGAGTAACTAATTTAGAAGCATTGTAGCTTCCCATGTGGGAGCATAGCGCTCCCCCACCACCAACCCTCTGCCCAACACCTCCTTTTCCCAAACAACCTTCCAATTTCAGCCCGATATCCTTTTCTTGGCTATTGATATTGGGTATAATTGATAGTGATATAACTTTTATCACAATGAATACAGGAGGAGGTAGATTATGGACGGGAAGATTTTGTTTTTCTTACATATGATCGGGACTCTGGCGTTGGGATTTTATCTGGTGCTGCCTTTTATTCTGGGCCGTGCGGAGAAGCTGTCACCAGCTGCTAAAGAAGGTACGCTCAGCGCGATTGGCGGATTTAACCGTTTTGCCCAGTATGGATTGGTTATTCAACTACTGACTGGTGGTTACATGATGACCAAAGGCGAGTACTCCGTACCGTGGATGATTATCGTAGTTGTGCTGTTGCTTGCGATGTTTGCCCTGGGTGGCATTATGAGCAAGCC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGTGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCCATGCGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //