Array 1 66349-63672 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOI01000021.1 Azospirillum sp. INR13 pad28_BEN4355A3_BEN4355A3P4P.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 66348 32 100.0 34 ................................ TTGCACCCCTGCGACCCCGTATAAACGACCTTCG 66282 32 100.0 33 ................................ TGCCTTTTGGACCAGGGGCCTGAGGACACGGAC 66217 32 100.0 33 ................................ GAGCCACCGCACCGGCAAGCGCGTCACGGCGGC 66152 32 100.0 34 ................................ CTCCCTCGGGCACACGCCAGCCCGGACCTTGGCC 66086 32 100.0 35 ................................ ACGCCGACCGGCGGAACGTGGGTGGAGGTGGTGAC 66019 32 100.0 35 ................................ CCTATGCCCGCTACCTATAGCAGCGCCGGCACCGC 65952 32 100.0 35 ................................ GTCTAAGCGTCCGGCGGTATTGTTCCGCCCACCGT 65885 32 100.0 35 ................................ TCCGCTCCATCGATCCGGTCTATGCCGCTCACGCC 65818 32 100.0 33 ................................ CCTGCGCCGCCGCCATTGCCGCATTGACGCAGA 65753 32 100.0 35 ................................ CGCCCCAATTCCGCCGCTGTGAAGGCCGCCCGCTT 65686 32 100.0 37 ................................ TCTTCACCGGCCCGGATCAGGCCCTTCCACAGTTGTC 65617 32 100.0 34 ................................ TCCGGCTCGGATCAGGCCCTTCCAAAGCTGCCGG 65551 32 100.0 33 ................................ TCATGCAGGTAGACCAGATGCTCAACGGCCTTC 65486 32 100.0 35 ................................ CTTGAGGCGGGCAAGCTCCGGCTCTGCCCATGCCC 65419 32 100.0 35 ................................ CTCGACCCTGGCGATGAACTCCCCCCAGATCGGGG 65352 32 100.0 34 ................................ TCGATCCCGATGAACTGGCGGCCGGCGTTGACCG 65286 32 100.0 33 ................................ AGGGCGGCGCGTTCCGCACTGGCGTCCAGCGTG 65221 32 100.0 34 ................................ CATCGCGGTGCCGGTGACCGGCGGCGTCGGCTCC 65155 32 100.0 35 ................................ CCGTACACGGCCATTCAGCTGACCAGCCGCGTCGA 65088 32 100.0 34 ................................ CGCCGGGGCAAGCCCAAGGCCGGCCCGGCCGCCG 65022 32 100.0 35 ................................ AAGCGGGGTCATTGAACGGCCTCCAGGGCAGGCGC 64955 32 100.0 34 ................................ CACCAACGTCGCTCATGCTGCTTCTCCTGCCCAC 64889 31 96.9 33 ..............-................. GCGCCTGAAAAGACCGATGGCGTCACCCGCATC 64825 32 100.0 33 ................................ CCCAAGTGCGTCACGGCCTGCGCTGACGGCAGC 64760 32 100.0 34 ................................ TGTCCGGTCTCCCACGCCGAAACCGTGGAGCGGG 64694 32 100.0 35 ................................ TACGCCTCGAATGAGGGCTACGCGGCCATCTTCAA 64627 32 100.0 34 ................................ GGCGCATCGCCGGGTATCATCTCCAGCGCGTTCC 64561 32 100.0 33 ................................ CACCCGGTCATAGTGCGGCGCGTTGTCGCTCAG 64496 32 100.0 33 ................................ GTGTATCCGCCGTCCGCCGTGAAGTGGGCAGGC 64431 32 100.0 34 ................................ GTTCGCCTTGGTCAACTGAGCCAGCGAGCGCAGC 64365 32 100.0 34 ................................ GCCTCCAGATCGCGCGCATCGACGGTCAAAACGG 64299 32 100.0 34 ................................ TCGACGTCATCGCCGCCCTGATCGGCACCGACCC 64233 32 100.0 34 ................................ GCCGCCCTGCGCCGGGTGGCTCACCTTTCGGCGT 64167 32 100.0 35 ................................ AACGCCTATCTGGTGGCGACGCAGCGGACCGCCGG 64100 32 100.0 33 ................................ TCCTCGTAGAAGCTGGTGCGGCTGTAGAGGCTG 64035 32 100.0 34 ................................ TCGCATACGCCGAGGTGCTTGGCGGCAGCCTTTG 63969 32 100.0 33 ................................ TTCGGTCATTGGCGTGCTCGTCTGTGCGGAGAA 63904 32 100.0 34 ................................ TCCGGTTCGTCCGTGAAGTGGTCGCCGCCCCCGG 63838 32 100.0 36 ................................ GTCTCGATCGTCGCGGCGCCGACATGGGTGGTGACG 63770 32 100.0 35 ................................ GGGGCGAACCCGGCGGCCATGCCGTCGGATGGCTC 63703 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 99.9 34 GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Left flank : AAAGCCGTGCTGGTGCTGGTTTGCTATGACGTGTCCACCGAAACCCCGGTCGGCCGGCGGCGCCTGCGCCGTGTGGCGAGGGCTTGCCAGGACCATGGTGTGCGGGTGCAATTCTCGGTGTTCGAATGCACTGTGGATCCGGCACAATGGACCGCACTCCGCGCCCGGCTGCTGGACCTGATCGACCCCAAGACCGACAGCCTGCGCTTTTATCTGCTGGGTTCGTCGGCACGGCACAAGGTGGAGCATGTCGGCAGCCGCCCGCCGACTGACCTGGACGAGCCCCTCATACTATAACCGAGCGTGCGCTTGCACGGCTCTCGCGCGAACCCCAAGCGGCCACGGAATCCCCGGCAGGTTCGCACGCTCTGATATCCCTTGAATTATCGCGGACTTCCGCAGTGCCGGTCTGCAATCCCCAGCCACCACATCAGCAATTTTCCAGGGTTCGCAGAATCAAGCCCGTTTTCGATGGTCCGTCAACCGGTTATGCTGAAGCA # Right flank : AACTCAATTCAGGGGACCACCGATAATGGCTAAGTCGCCCTCCGTGCGGGCAAGGTTGTGCGGCAGGCATTGACCAGCCGGACGAGGGCCCGCAGGCTTCCGGGCGTAAAGCGTAGGGCCGGCATGACAGGCTCCTCGGCACCGGCGGCTTCAGTCCAGGCCAGCGGGATCTCTCGCCGCTGGCCGTCCTCCCCTTCAACGAGCAGATCCGTTCCCTCGTCACGTCGCAGACGCCGCATTGCTCGAACAACCCGTCCCACCCACGGATGGTGCGGCGCGGTCACCCGAGTCCATTGAACCTGAGCGGAATGGCCAGATGTAGTATGATGGCCGATGTGGCGATTCCTACGACAACGCGTTGGCCGAGACCATCAACGGCCTTCTACAAGACCGAGGTGATCCACCGCCGCGGGGCATGGCGCACCTTGGGGGCTGTCGAGTTCGCCACCCTGGAATGGGTAGACTGGTTCAACCACCGACGCCTCCTCGTACCCATCGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 2 75356-77722 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOI01000021.1 Azospirillum sp. INR13 pad28_BEN4355A3_BEN4355A3P4P.28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 75356 32 100.0 34 ................................ ACCAAGGTCAAGGACACTGCGGCCAACGACAATG 75422 32 100.0 35 ................................ CAGGCTGAGACCATCGTGAACGGCGCCATCCCGGC 75489 32 100.0 34 ................................ ATCTGCTCCAGCGCCTGTTGCAGCTGCTGGACGG 75555 32 100.0 36 ................................ TTGTTGATGGCCGTGTGGCTCACGCCGTGCTGACGG 75623 32 100.0 35 ................................ TTTGACAATGCCCAAACCGGCACGCTGCCCTGCCG 75690 32 100.0 35 ................................ TTGTCCTGGCCGAGGATCCGCACGATGCGCTGCCC 75757 32 100.0 35 ................................ TTGTCCTGGCCGAGGATCCGCACGATGCGCTGCCC 75824 32 100.0 34 ................................ AATCTCGAGCTGCAGCATCGCCCGGCGCGCGGCG 75890 32 100.0 35 ................................ GGCCTGAGCGTCGCGCAGCTCCTCGTCACCGGCAG 75957 32 100.0 34 ................................ AGGCCCCAGCGACGGCGGGGAGGATGGCAAGCAA 76023 32 100.0 35 ................................ AACGCCCTCCGCGCCGGCGGCGCCGTGTTCGCCGG 76090 32 100.0 36 ................................ ACGCTGGTGTCGTCCTCTGTGTGTGGGGGCGGTCAT 76158 32 100.0 33 ................................ CGGTCATGGTTCGGAAGCGCGGGCGGGACACAG 76223 32 100.0 34 ................................ ATGCTGTGACCTATCCCCTCGCAGACACGTACCG 76289 32 100.0 35 ................................ CTGCGACCGCCGATCAACCACATAGTCATGCAGAT 76356 32 100.0 35 ................................ CAGATGCTCAACCGTTGCCGCGTCCACCACGATCT 76423 32 100.0 34 ................................ GGCAAATCATCCGTCTGAGAAAGATGGACAAGGC 76489 32 100.0 34 ................................ ATGGCCTGTCGCCGGCTTACTGCGACCTGTGCCG 76555 32 100.0 34 ................................ AATGACCCCGCTTGAAGCCATCGTCCTCAACGCC 76621 32 100.0 33 ................................ ACGCAAGGAGCGTGACGACGGCATCCGGGCCGG 76686 32 100.0 32 ................................ GCGCCTGCCTGGGCCTGATCGGCACCTGCGGT 76750 32 100.0 35 ................................ TTCGCCGCGTCCGTCACCCCGCCCAGCGTCGCCAC 76817 32 100.0 37 ................................ CCGTTGGAGGTCTGATGGACGCCGGCTTGCTGCAGCT 76886 32 100.0 35 ................................ AGCGCTCATCGGTCTCCTCCTGGGGCTGGAGGGCG 76953 32 100.0 35 ................................ TTCCTCGCTCTCATCGGCCCGCCGGCTGGGCTCGT 77020 32 100.0 34 ................................ CGGTGCTTGGTGATGCCGCACGGACGCCAGCCGG 77086 32 100.0 33 ................................ TTCCATGTCTTTCAGCCGTTTGGCGGCGGCTGA 77151 32 100.0 37 ................................ CTGTCGGCTCCGAGATCATCGCCATCGTCCGTCGCGA 77220 32 100.0 34 ................................ TCTGCCGAGACGGCGGGGTCGACCGCCACGACGA 77286 32 100.0 33 ................................ GGGTACTTGTCAGCGATGGGCAGGCGCGGGGTG 77351 32 100.0 36 ................................ CCTTCCGGCGCTCAGCGCATCGGCGTAGCAGGCGGC 77419 31 96.9 41 ...........-.................... TCTCATTGCGGCGGATTGGCCCGCTGCCAGAGGTCGGAGAC 77491 32 100.0 36 ................................ AGGTGCGAAGGCGATATTCGCGCTTACGGACGACCC 77559 32 100.0 35 ................................ TTGCTGAGTACGACGGCCACGTCCAACCCATCGGC 77626 32 100.0 33 ................................ AGCACGCCATCGCTCACGGCGCAGAACACTCCC 77691 32 90.6 0 .....T.......T......A........... | ========== ====== ====== ====== ================================ ========================================= ================== 36 32 99.7 35 GTCGCCCTCCCCGCGAGGGCGTGGATTGAAAC # Left flank : GTACCGTTCCAGAGCGTAGACGGCCCCGGCGGTGGAATGGTCCACCTGCCCCCGCCTGCCGTTGGGCATTGACAGGTACTCTTGAAAGGCTTGAGCATATTTGCCGGCATCGTGCAGCAGGCCCAGCGCCCTCGCGAAGGCGGCGGCCGATCCGTCCGCCAGCAAGTGGGCACCGAAGCTGTGTGCGATCCGGGCGACGAGTTCCAGATGCTTGCACAACGGCTCCCATTCCGCCTTGGGCCGATCAGGCAGGGTATGGGCGTAGCAATCCATGACATCCTCGCGCGATGGTGGCCCTCCACCCTACCAGCGCTCTCGCAGTTGCGCGAACCCCAAGCTCCCATGGATATGCTTGAAGGTTCGCACGGCCAACAGACACAGGGACATCAACGCATTGAACATCACATGGTAGTTTTTCCGCCGTCTGCTTGGCGTCGAGAAAGCGGGTTCGCGCAATGGAGCCTATTCTCCGTTGAACTACAAAAGCTTAAGCTCTGGCG # Right flank : CTCAATCCCATCAATCCTGTGGTGGAAGCAGTCGATCGCCCTCTCCTGGAGCGTTTTCCGATCAGGATGAATATCCGGCATTTTTTGAAGAGGTTCCGGCACTCGTCTGGCTTGTATAGGTCGATGATGCGTCCGATGGCGCTTCAGAGCTCGTCACGGGTACGCTCTTCGGCCTTTCGCAGCAATGTCTTGAGCTTGGCGAAGGCTTGCTCGATGGGGTTGAGGTCGGGGCTGTAGGGCGACAGGTGGAGGACACGCGCGCCCCGCGCCTCGATGGCTTCCCGGACGCCGGCCACCTTGTGGCCGGAGGGGTTGTCGAGGATGAGGATATCGCTGCTTTGCAGCGTCGGGCTCAGAACCTGCTCGACGTAGGCGCGGAAGGCGGTGGCGTTGATCGGTCCGTCGAGCACATAGGGGGCGACGATGCCGGTGGCGCGCAGTCCGGCGATCAGCGTGGTCGTCTTCCAATGCCAATGCGGGACGGGGGCCAGAAGGCGCAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCCCGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 144283-145967 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOI01000049.1 Azospirillum sp. INR13 pad60_BEN4355A3_BEN4355A3P4P.60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 144283 36 80.6 30 ACA......A...T.....AT............... GAAGTACAACGAGGTGCGCGCCATGCTCAG 144349 36 88.9 30 .C.....T...C....A................... TATACATCGCCTGCGGCGATGTGCGCGGCA C,A [144360,144369] 144417 36 97.2 30 ...C................................ AGGGTCAAAGGCGGGATCATACACTGGCTC 144483 36 100.0 29 .................................... GCAGTGTTCGGGATCTGATCGGTGCCGTC 144548 36 100.0 30 .................................... CAGCACGCTGCCGAGCACGTTCCATGCGTC 144614 36 100.0 29 .................................... CGCGGGTGGACAGCATCTTCGACGCCGCT 144679 36 97.2 29 .............T...................... GCCCGAAACTTGATCCAAGTGTCTGGGAT 144744 36 100.0 30 .................................... GCAATACGATGCTGTCGCCAAGCCGGTGGA 144810 36 100.0 30 .................................... CGTTGGTCGAGAAGGCCGACAGATCGACCA 144876 36 97.2 30 ..............T..................... CCCCGCCAATATAGCAACCGAGTCGGTTCC 144942 36 100.0 30 .................................... TTTCAGGCGGCGGAGACGCATGGCTATTGA 145008 36 100.0 31 .................................... ACGGGCGCTCCCGCACACCCCAGCGAAAACA 145075 36 100.0 30 .................................... CTCCTTCCGCGCTTTGCACTCGACGGAATA 145141 36 100.0 30 .................................... CGTGGTAAAGCGGGTATGAAGGCCTGGTTG 145207 36 100.0 30 .................................... TGTCTGACGATGGAGGGCGGGGCGCCACCG 145273 36 100.0 30 .................................... CTCCTTCCGCGCTTTGCACTCGACGGAATA 145339 36 100.0 30 .................................... CGCCCGCATCAAGGAATACTGGGTCTCCCA 145405 36 100.0 30 .................................... TGTCTGACGATGGAGGGCGGGGCGCCACCG 145471 36 100.0 30 .................................... GGATACCAGTTCGGTATAGACCCGCCCGCC 145537 36 100.0 30 .................................... TCCCACCGTTCCGGTGGTGCTGCCGAGCTT 145603 36 100.0 30 .................................... CTATCGCGAAGATGCACGAAAAGCGGACAG 145669 36 100.0 30 .................................... GGCGGAGTGGCGCGCATCGGTGCGGGCATC 145735 36 100.0 30 .................................... CTCGGCGACCAGATGAAGGGCATCCTCGAG 145801 36 100.0 30 .................................... ATCAACTCCCACACGATCAAGACCCTGTCT 145867 36 100.0 30 .................................... AGGGCTGCTGACCATGGTTACCTCCAGAAA 145933 35 97.2 0 ...................-................ | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 98.4 30 GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Left flank : GCCCGGCTTCATCTTCGTCGACCGCCTCAGTGCAGTCTCGAAACCGCCCGGTGGATGGTCGGGTACGTGTGTATCCCCAAAAGTCCTGCACCAAACGCTCCGTTGCGATTCCTGAGGCAATCGTCACGTTATGGTGACAAAGCGTCCGGAGGCCCCATGAACACGGACAGCAATGATTTGGCCGACGCGGTGGCGTTGCTGGAGCGTGAGTTTCCCGACTGCGCTTGGAGCGCAACCCGTATCACCAACCCAAGGCATTCAGACCCTCCTGAAGGGCCGGGGGCTGCAATATTGCTACATGTTTCCTCTCCAAATGGTGGCGAACCATTGGCAGTGTGGGAGAAGCACCCGAACAGCTTTTTGGCGGCCGCTGAACGTGCAACCACGCGTATGCATTTCGAATTGCAGGTCAAGCAACATGCTTAAGGGTAGTTCTCAAAGCACAGTGATACGGTCTGCAATGAGAGCTTCTGCTAGCATTGCCAGCGGATATACCAGAT # Right flank : TACGACCCCGGATAACCCACTGAAACAAAATGGGTTATTCGGGTTTCTTTTCTGAAGACCTTCCATCGGATGCCCGTCAAAACAGCTTGAACTGTTCGTATTTCGCGGCAGGTTCTTGTTTCGTGCGCGTGTCGAAACACACCATCGTCTGGTATTGACGGTCGGTGAAGGTCAGGATCTGCACCTTTCCCCGCTTCGGCAGGTTGGATCTGATCCGTCCGATTCGCGCCTCGACCTGCGGTGTGCCGGCGCAAAAGCGTATGTAGACACTGAATTGCGACATCTCGAAGCCCTCATCCAACAGAAAATTGCGAAACCGAGTCGCCGCTTTCTGGTCGGTTTTGGTCACGGTCGGCAGGTCAAACATCACCATCATCCACATGAGCCGATACGCGCTGAGTGGCATGCGCGCCCTCCTTGCCTGAAGGACCACGGGCTATTTCGAGGGGAAGCGGCGACAGCGGAAGATCGAGAACCTGACGCTCGCCCGAAAGAACCTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //