Array 1 1400952-1402359 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134472.1 Parvimonas micra strain NCTC11808 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1400952 30 100.0 34 .............................. CCAATGAATTCAGTCATAGCGTTTTCATCTTTAC 1401016 30 100.0 36 .............................. TATTTAGCTAATGATTTAATTGCTACTCCTGCAAAG 1401082 30 100.0 35 .............................. GTTCTGCAACTTTTTTACTTTCTACAGCTTTTTCA 1401147 30 100.0 36 .............................. TTTTCTATTGATATTTTATTATTATTGATTAATTCG 1401213 30 100.0 35 .............................. TATATTTTGTCAAAAATATTTTTTGGTTATTTTTC 1401278 30 96.7 41 ...........G.................. GTTGCTGCTAATCCTGATACAGTTCCAACAGCTGCTGCTGT 1401349 30 96.7 35 ...........G.................. TAAGTAAAAACTCCTTGTTCAAAAGTAGTAGTTGT 1401414 30 96.7 37 ...........G.................. TTATGATAAGGAAAATTAGGTTTGTATTCCTGATATT 1401481 30 100.0 35 .............................. ACAACTCCTTATTCTCGTATATATTGCCTATTACT 1401546 30 100.0 35 .............................. TTTGTTTATTTTTCAGTATCTCATCTACTGTAACT 1401611 30 100.0 35 .............................. ACTTCCTTTTGTTGAAGATGTGGACAACGAGATTG 1401676 30 100.0 38 .............................. GATTTCCCATTAAGCCCATTACCAAAGAGAATAAATAA 1401744 30 100.0 36 .............................. AAGGAAGTTAAAGAAAAATAGGAGATAGAAATGCTT 1401810 30 100.0 39 .............................. TTATATTCTGTTGACATTTTTATAAATTGTCTATCTTCA 1401879 30 100.0 35 .............................. ACTACTTGAGGGGCCGTATTTGAGTTAGCACCTAT 1401944 30 100.0 31 .............................. CTGATGATATACTCATCAGCGAAACGTTGTT 1402005 30 100.0 36 .............................. TCCATGTTTTTCTCCTTTCTCTTGTCCTGATTTTTT 1402071 30 100.0 35 .............................. TTTAATAAGTCTTGATAAAATTTTAATCTTTCAAG 1402136 30 100.0 34 .............................. TACACAAGAATTTTTTTGCCTTTTGCTGTGTATC 1402200 30 100.0 35 .............................. GAAAATTTAACCGCTTGATAATATCGCCATTCTTC 1402265 30 100.0 35 .............................. TTTACTCCTTGAATCATAGCAACTGCAGTTTCAAT 1402330 30 83.3 0 ........................T.CGTA | ========== ====== ====== ====== ============================== ========================================= ================== 22 30 98.8 36 GTTTAAATAGAAACATACTGTAATGTAAAT # Left flank : GAAATAGTAATAAAAAAGATTACTGATAACAAAACTAATGTAAATTATGAATTTAATATGGAAATATCAAAAGAATTAATGAAGATTATTAATAATATAAATTCTGAATTAAACAATATAAATGACGATGAATACATTTTATTTTTAGGAGGCTTTAAAGGGAAAATAAATTCTCTTAATGGTAAAATAAATATTGATGATATTAAAAGTGGATTTTATTTATGTGATATCGGAGGCAAAAAATATCTTCCATATGGACTTGTAAAACTAAAAATTGGAAATTGAAAATATTTATAAAGAATAGTAAAATTATTAAAAAAGATGATTTGTCAACCTTCAGTATATAAAATTTATTGGAGGTTCGACAGATTAAAAAATTGTTATAATTTCAAGTAATTCTGTTTCGATTAAAAAATTTAGTGGAAAATTTCAAAAAAATTTTGTATATAGACAGAATTGACTTATTAATGGTAGTATTTTCAATATGTACAGAACTGCCT # Right flank : AGGATAGTTATATTTTTGACATTGAGATGGCGATTCAAGTCTTGTTTGTGAGTAGTGAAAATGTCATTACTATATTGCTAATCCTAATAGATTTATTTCTGTATTTTGATTAGCAATTATGCTATAATATAAAAAAATATACAAAACTAATTATATAAACTATTTTGTATTTATTATTTGACACATTGGAATGGTAAAGTTTTAGGGGGGCTGTCTTATGAACGAATTTAATAAGTATAAAATACTAAGTGCGGGAAAGGCGTTTGGACATAGGGCTAAAATTGCTTTATTATTACTTGATAGCAGTACAGCTTATGAAGAACTTAAAGAGGAAGCTGCACAGACTTCAGTTTCTGGAAGTTATGATTGTGTAGGTGGTTTTCCTGCTGAAATACTTGAAAGAATAATAAAGGAATTGATATGCCGTGATATATGGTATTTGCCTGACAATGTAAAATTTTGGGACAGGCGTTTTGGGAGTCTATTTGAGACAAAGTTTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATAGAAACATACTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1404904-1405656 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134472.1 Parvimonas micra strain NCTC11808 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1404904 30 90.0 35 ..A..G..G..................... ATAAACTTGCTTGTGGGTCTAAATCTATTAATAAA 1404969 30 96.7 36 ...........G.................. ATATCTAAATAAGGTATCTTTCCGCCTGTAAAAGCA 1405035 30 96.7 35 ...........G.................. TTTTTCTATTGCTCTACTTTTTAAAATTTCTTTTG 1405100 30 96.7 34 ...........G.................. TAAAGTCGCTAAAATTTATCTTATTTTTGCATTT 1405164 30 96.7 36 ...........G.................. ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT 1405230 30 100.0 36 .............................. ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT 1405296 30 100.0 41 .............................. ATTTTAAGCGAGTTTTTAGCTTATATAAATTCCATTTATGA 1405367 30 100.0 37 .............................. TTAGCTCATTATATTCTCTTAAACATTTTGAATGCTC 1405434 30 100.0 34 .............................. ATCAAAAATTTCTAAGTAATTATTTTGCTTTTTT 1405498 30 96.7 35 ..........C................... GTAGCAATAGTTGAAGATGAAAACGGATTACAATC 1405563 30 100.0 35 .............................. TATTGTCTTTCAAGTATTTTGAATAAAACTCTGTG 1405628 29 90.0 0 ..........C......T.....-...... | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 97.0 36 GTTTAAATAGAAACATACTGTAATGTAAAT # Left flank : ATTTATGATGATGGACTTTATTATTGTGATTCCGAAGTTCGGCTCTAAACATTTTGGTGCACCTGATGATATAAAGGAAATGATGGAGAAGATACCGGACAGAGCTTCTTGGGTGAATATAATTGGTGTATGTATTATGATAGTCGGATTTGTTGGAGTAATAGCGGTTTTTATATGGGCTATGGTTGATACGGTAAAAACTGATATGTCTTTTTTTGGTGCATTCATCAGATTTTTCATTATCACTGAAGGATATAAATTATTTGATATCATATTTTTTGATTATCTTATGCTTACAAAGTTAAAGTTGCCTGCAAAGATTTACCCTGAAACTGCTGGAGCGAAGGGATATGACAACTTTGGATTCAATACGAAAAGTCAAATGAATAAGCTTATTATATTTTGTGTTGCAAGTATTCTTTTAGCATTCATTTTAACGGTAATTATTCCATTAATGTAAATAAATATATTTGATAAATTTCATTAACACCGAACTTTTT # Right flank : TTAGATATTTACAGTTAGTATTATACTTAGCTAAAATATGAATACATTGTGTTTGCAAATTATTATACAAATCGGTTATAATATATATTACTTAAAAGATTTTTAAATTAATATTATTTTTTATATAATTTTTGATGTAATTAGTAATATGTTTGGAGGAAAAATGAAAGCTATATTTTTTGATTTGGATGGAACTTTGCTTCCTTTAGATGAGAAATTATTTGTTGATATTTATTTTGCGGAATTGTCAAAAGTATTTTCTGTTTATAATATTGATAGTAAGAAGCTTGTTGAAACTATTTGGACTGCAACTCATGAAATAATTAAAAATGATGGAAAGAGAACTAATGAAGAGGCCTTTTGGGATAAGTTTAATAGTAATATAAATATTGATTTATCTGATGTTAAAGAAGTATTGAAAAAGTTTTATGCAAATGAGTTTTTTACTAAGTTAAAAAAGTGTTCAACTGAAAATAGTTTGGCAAAAGTTGCCGTTGAAC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATAGAAACATACTGTAATGTAAAT # Alternate repeat : GTTTAAATAGAGACATACTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //