Array 1 462529-464264 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHQV01000003.1 Salmonella enterica subsp. enterica serovar Muenster strain ARWAIA NODE_3_length_464478_cov_18.783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 462529 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 462590 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 462651 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 462712 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 462773 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 462834 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 462895 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 462956 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 463017 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 463078 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 463139 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 463200 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 463261 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 463322 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 463383 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 463444 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 463505 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 463566 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 463627 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 463688 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 463749 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 463810 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 463871 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 463932 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 463993 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 464054 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 464115 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 464176 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 464237 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16589-19119 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHQV01000009.1 Salmonella enterica subsp. enterica serovar Muenster strain ARWAIA NODE_9_length_178733_cov_16.3793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16589 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16650 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16711 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 16772 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 16833 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16894 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 16955 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 17016 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 17077 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17138 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17199 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 17260 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17322 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17383 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 17444 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 17505 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 17566 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 17627 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 17688 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 17749 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 17810 29 100.0 32 ............................. GACGATTTTAACGCCGTATCCCGTTCTTATAA 17871 29 100.0 32 ............................. CCGGCCGCGATCGCGTCTTCCAGGGTGATGAC 17932 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 17993 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 18054 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 18115 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 18177 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 18238 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 18299 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 18360 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 18421 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 18482 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 18543 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 18604 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 18665 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 18726 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 18787 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 18848 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 18909 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 18970 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 19031 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 19092 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //