Array 1 3292363-3291175 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRDN01000001.1 Escherichia coli strain HC891/2016 scaffold_ordered_by_SE11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3292362 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 3292301 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 3292240 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 3292179 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 3292118 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 3292057 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 3291996 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 3291935 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 3291874 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 3291813 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 3291752 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 3291691 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 3291630 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 3291569 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 3291508 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 3291447 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 3291386 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 3291325 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 3291264 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 3291203 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3318948-3318065 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRDN01000001.1 Escherichia coli strain HC891/2016 scaffold_ordered_by_SE11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3318947 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 3318886 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 3318825 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 3318764 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 3318703 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 3318642 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 3318581 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 3318520 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 3318459 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 3318398 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 3318337 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 3318276 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 3318215 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 3318154 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 3318093 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //