Array 1 72457-73452 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZJ01000004.1 Pluralibacter gergoviae strain SS84A28 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72457 28 100.0 33 ............................ CCAGTGGTCGCCGCACGTTTTCAACACCATGGC 72518 28 100.0 32 ............................ TTCCGCGCGGCGTGCTATGGAGGAGAGATATA 72578 28 100.0 33 ............................ AACGTAAAATTCCTTGTAGCGCTCTACGGTAAT 72639 28 100.0 33 ............................ CTTATCGCCCGGTATCATGAACAGGCCTTTGTT 72700 28 100.0 32 ............................ AGCTCGTCCGTTACCAGAACGAACTTTGGAAA 72760 28 100.0 32 ............................ AGCCGATAGCCCACTGGATTAGCTCATCCTGG 72820 28 100.0 32 ............................ AACCGGCGGCCGACCCTAACGGCGGTAACGGC 72880 28 100.0 32 ............................ ATTGTATACATTGAGGTAACCTTTTTGCAGGG 72940 28 100.0 32 ............................ TCGACGGCTGCCGTAATGCATTCCAGGCAACC 73000 28 100.0 33 ............................ TGTAGTTGTGAAAACGTTAGCGGAATACACTCT 73061 28 100.0 33 ............................ TTTGGAGTCACCATGCTGACGATGATTTATAAG 73122 28 100.0 33 ............................ CTTTCTTAACTTCCGAATGATCGGCGAGCCGAC 73183 28 100.0 32 ............................ GTCAGGAAGAATCCAGCAAAAAAGCCGAGCTG 73243 28 100.0 32 ............................ TGAGTCAGTCCAGATACGAAACCCCCGACTTT 73303 28 96.4 32 ..................T......... AAGCTGACGAATCCGGCGCATCGCTGCGCGCT 73363 28 96.4 33 .................A.......... TCATCAACGCCGTAGTACGCCATGAGTTTGCGC 73424 28 89.3 0 .......................CTC.. | A [73445] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGAAGCGCGCGACTGGCTGGCGGAGAAGGGCTACGACCGTGCGATGGGCGCCCGTCCGATGGCCCGCGTTATTCAGGACAACCTGAAGAAGCCGCTGGCCAACGAGCTGCTGTTTGGCAAGCTGGTGGACGGCGGCCAGGTGACGGTCGATCTCGATGCCAGCAGCAATACGCTGACCTACGACTTCCAGGCGGCGCAAAAGCGCAAGGCGGAAGCGGCGCACTGAGTGGCGGAAGCGTGACGACAAACCGGGCGAAAGCCCGGTTTTTTTATGTCTGTGGCCCGGTCCGGCCCGGCGGTGAAAACGAATATAAAGTCGGTATGCCGTTATCTGGTTTTATGAGCGACTGGGCTGCCTGCTTTTGCCGACCCTTTTTTTATGCGGGTTGGTAACATATTGATTTTCAATATGCATTTCAGGTGGTAATAAAAAAGGGTCTGCGCCACCAGAATCTGTTTTTTCTGTTTTATAACAGTGTGATAGAGTATTCGATGGTTA # Right flank : ACATAACCCATTGACCACGTTCCTTAATGAGTGCTACCACTAGACCAAATTCGGGAAGCATTACATCACGCCGCGAGGGAATCATGCAGATCCTGCCATCAGATTTAAAAACCATCCTCCACTCCAAACGCGCCAATATCTACTATCTCGAAAAATGCCGCGTGCAGGTCAACGGCGGGCGGGTGGAGTATGTTACCAGCGAAGGCAGCGAGTCCTGCTACTGGAATATCCCTATCGCCAATACCACGGCGGTTATGCTTGGCATGGGCACCTCGGTGACGCAGGCGGCGATGCGCGAGTTTGCCCGGGCCGGGGTAATGGTCGGTTTTTGCGGCACGGACGGTACGCCGCTGTATGCGGCCAACGAAATGGATATAGATATCTCATGGCTTTGTCCGCAGAGCGAGTACCGGCCGACAGAGTATCTGCAGCAGTGGGTCTCTTTCTGGTTTGATGAAGAGAAGCGGCTGCAGGCGGCAAAGCGATTTCAGCAGGTCAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 82660-82988 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZJ01000004.1 Pluralibacter gergoviae strain SS84A28 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82660 28 100.0 32 ............................ ATTGATGGCAACATGGGTCATCTGCTCGATGC 82720 28 100.0 32 ............................ GTACGAAAACACACTCATTGAGTGTATAGTAA 82780 28 100.0 33 ............................ TACGAAAATACGATCAGGTCGCATACGCAGGAT 82841 28 100.0 32 ............................ ATCAGTATCGGCAATGTATATCCCGCCATCCC 82901 28 100.0 32 ............................ GTAGTCATCGTCAGATGGCATACGAAAGTAGG 82961 28 82.1 0 .....................CCCA..C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGCGCGGAGATCGCCGCCGTACCTGCGGGCGCCCGGTGGCGTACCGTCAGCCGCGCGCAGGTGAAAAGCAGTCCGCAGCGCCTGATGCGCCGCTCGGTGCGCAAGGGCTGGATTTCGCAGGCGGAGGCCGATCGGCGGCAGGCAGTTACGCCGGCCCGAACGCTGAATCTCCCTTATCTGAATCTGAAAAGTCTCTCCAGCCAGCAGCACTTTCGCCTGTTTATCGCCCACGGCGAGCTGCGCCCGACACCCACGGCAGGAGCGTTTAGCAGCTACGGGCTAAGCGCAACGGCCACCGTTCCCTGGTTTTGACCTTACGGACCGCGGTTTTCGCCGCGGCCTTTTCTTTATTACGTTGCGGTTATGAAAACCCTTTTTTTGAGCAATGATCTAACGTATTGATTTTATTTAACTGAAAACGTGAGGTAAAAAAGAGGGTAAAACATGGTTTTTGGGCGTTAATGGTTTTGTAACAGTGGTATAGAGCAGTTTTACTCTT # Right flank : CTCCGGACATAAAAAAGCCGGGAATAAACCCGGCTTAACTTTTCGACTACCCCACGGGCATCAAATCAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATATAGTTTTTACGCATTTTACCGGAGATATGCGCGGTAACTACGTGACCGTTTTCCAGCTCTACGCGGAACATCGTGTTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGGTATCACTACCATAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGATTTACCGGTCATCTTTCCGCATACGCGGCGACCGAAATCTTGAGATCGTTTTTGCGCATTGCCCGAACGTCGCACAGATACCGTGTGACGAGCGCAAACCAAAGGGGAGATTCCTGAAACGTCGGCAGGGCAACAGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //