Array 1 283-2170 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFY01000067.1 Pseudomonas aeruginosa isolate 77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 283 28 100.0 32 ............................ GTTCGCCGGATCGTTGATCCGACGAGCCGGGG 343 28 100.0 32 ............................ TGTTCATCCTGGCAGCCGGCCCGATCTGGGGC 403 28 100.0 32 ............................ AACAGCCTCCGCAAGGGAGGGAGGGGAAGCTT 463 28 100.0 32 ............................ AAGGACTATTAAAGGCAGTGTTTCTTCGCTCA 523 28 100.0 32 ............................ AGAAGCCCCGCCGCCAGATCGAGGAATATATT 583 28 100.0 32 ............................ TCGACGCGGAGCTTGCAGCCATCGACGCGAAT 643 28 100.0 32 ............................ ATTGCCGTTACCTCGAGCTTGTCGTCTATGGC 703 28 100.0 32 ............................ GTCCCGGTATTTATCCAGGCCTGGGCGAGTAA 763 28 100.0 32 ............................ AGTAACGGCCAGGTTCGCATCAATGCGCCGGA 823 28 100.0 32 ............................ ACCCCAGATCGGAAAACGTCGCACCCCTTGCC 883 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 943 28 100.0 32 ............................ ACCGGCTGCGCCTGCTCAACAACCTTGGCAAC 1003 28 100.0 32 ............................ CGGATCGGACGGAGGTTCGTCCGGATCAGTCG 1063 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 1123 28 100.0 32 ............................ AGTCACAGGTCAGCCCGTCTTCGTAGAGATGG 1183 28 100.0 32 ............................ ACGCCAAATTCACCGCAGTAACTGCACGGACG 1243 28 100.0 32 ............................ GCGACCTGCTGTTGCAGAACGGTTTGACTTAC 1303 28 100.0 32 ............................ AGCACGTGGCGCATAAGCCGGCTCAGCAGCTC 1363 28 100.0 32 ............................ AGATTGCTGTGCGTCTGGTGTTCATAGCCCCG 1423 28 100.0 32 ............................ TCCGAAGAGGCTGCCTAGCCAGATTGCTGTGC 1483 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGCGTCTAAATCCTA 1543 28 100.0 32 ............................ TACAACTCCGAGGCCAACAACGAAATCGGCGC 1603 28 100.0 32 ............................ TTCGGCCGATCGGTCGCGAAAGGCCATGAGTG 1663 28 100.0 32 ............................ TTGCAGCCACCCTCAAGGCCTGTGCCGCCACC 1723 28 100.0 32 ............................ GTAACCCGGCGAGCGTGCGAGCCACCGTCAAG 1783 28 100.0 32 ............................ TACAGTCGAAGAAAGAAAAGCGCCCAAAACGC 1843 28 100.0 32 ............................ TGACTCAGCAGGTCCAGCGAGTCGATACCGGC 1903 28 100.0 32 ............................ GCGATCATCCCCGGAGTCGACGTCAATGCGGT 1963 28 100.0 32 ............................ ATCCGGCGCAATCGAGATGGAGCCATCGCAGG 2023 28 96.4 32 ......................C..... AGCTCCGGCACCCCGGCGCCCATTGCCAACAC 2083 28 100.0 32 ............................ CACTGGAGAACGGGCTTACCTTCCTTGTAGAG 2143 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 765-1452 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFY01000088.1 Pseudomonas aeruginosa isolate 77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 765 28 100.0 32 ............................ TTCGGGATGATGAACCGGGCATGCGCGTTAGC 825 28 100.0 32 ............................ TGGCGAGCCCTGGAGCCGTTTCACTCTGTGAA 885 28 100.0 32 ............................ TTCGGGTTGTGCGGGAGCTGGCCCTGCCAGTT 945 28 100.0 32 ............................ TTATGCGCCAGTGCCGGTGGAGCCATAGGCCA 1005 28 100.0 32 ............................ TTCAGCAGCGACCCGGTCAGCAGCACGGTGCG 1065 28 100.0 32 ............................ CTCCTTGCCGGGCGCGGCGGCGAGCAGTTTGC 1125 28 100.0 32 ............................ AACAAAAACGCCGGCTCGAGGGCCGGCGTTCG 1185 28 100.0 32 ............................ AGAACGACGTAGATGATGCGGCGGGTGAACTC 1245 28 100.0 32 ............................ ACAAGAAACACACGCTTGCGGCGCTGGGCGAC 1305 28 100.0 32 ............................ AGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 1365 28 100.0 32 ............................ TGGCCCGCTGGTGGGCAACGGGTGCGACCACG 1425 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGTCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGCATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTGGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10614-9980 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFY01000088.1 Pseudomonas aeruginosa isolate 77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 10613 28 100.0 32 ............................ ATGCGGTTCTGCCACTCCAGCGGCATGGCTTC 10553 28 100.0 32 ............................ TCTTCGCGCATCGCCGGGGGCAGGACGCCAAG 10493 28 100.0 32 ............................ GGGAGCTAATCCGGTAGGGGATCACTAGCGGC 10433 28 100.0 32 ............................ TTCGAGCTAAGGCCCTTGGGGTCGCTACGAAC 10373 28 100.0 32 ............................ TTGGGTACAAATACCTTGGGTGATATCCCCTT 10313 28 100.0 32 ............................ TGAAGCGGCGCGTCGCCGGCACCAAGGTCTCG 10253 28 100.0 32 ............................ TCCCGCCGACGGGCTGTGTGTCGTGGAAACCG 10193 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 10133 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGT 10073 28 89.3 36 ...................TA.G..... AAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA C,C [10047,10050] 10007 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ==================================== ================== 11 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCATCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //