Array 1 578961-577632 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRT01000001.1 Listeria monocytogenes strain CDPHFDLB-F14M01626.68-2 F14M01626-68-2_Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 578960 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 578894 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 578829 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 578765 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 578699 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [578690] 578631 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 578566 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 578501 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 578435 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 578371 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 578306 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 578241 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 578176 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 578113 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 578050 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 577984 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 577921 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 577856 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 577790 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 577725 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 577661 29 93.1 0 .......................C....C | A [577636] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8241-5429 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRT01000002.1 Listeria monocytogenes strain CDPHFDLB-F14M01626.68-2 F14M01626-68-2_Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8240 36 100.0 30 .................................... AGAAATTATTCTAGCGATAACGGTTAGTGC 8174 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 8108 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 8042 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 7976 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7910 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7844 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7778 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7712 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7646 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7580 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7514 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7448 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7382 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7316 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7250 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7184 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7118 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 7052 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6986 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6920 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6854 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6788 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6722 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6656 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6590 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6524 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6458 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6392 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6326 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6260 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6194 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6128 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 6062 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5996 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5930 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5864 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5798 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5732 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5665 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5599 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5533 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5467 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5432,5435,5440] ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //