Array 1 4462-4623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALFC010000008.1 Litoribacterium kuwaitense strain SIJ1 NODE_8_length_100538_cov_97.7356_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 4462 32 100.0 33 ................................ AAATTATGTAAAGCGTTTGCGTAACATGTTTAC 4527 32 100.0 33 ................................ GTGCCATTTTAGTCCTCTTGCGTCGTATAGTGG 4592 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================= ================== 3 32 100.0 34 GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Left flank : TGGTCATGCAGCCAGCGTTTTATACGTACGCGGCGTCTCGAGCAACAGCCGGAACGCTAGCCATGTACCTCGGCTTTTCCAACTTGGCTATGGCAGTCGGTGGTGCTTTAGGAAATACGGCTGGAGGCTCTCTCTATGAGCAGCTTTCAACCGGAGGAAATGCAACCGGCTATTGGATCGTACTTGGCGCGGTGTGCCTGCTGCCATTGTGTGTGCCTGCGCGCTGGTGGAAAGACTCGAGCAGTGGGACCACAGTCATCCCGAAAGAGAAGACAAATGAACCGATGTCATGAAAATAAAGAACGTGTTATACTATTCGCATACACGAAAGGTGCGAACCATAAGCGCACATGAAATCCTCGGGAGGTTCGCACCAAATTTGTTAAACACAATAAATTTATTTGGTGTTTTATTCCATTTTAAATGGATAATAATGCCTAAATAAATTGATTTTCGATAAAAACGCTTCTTGAAAACCCATTTTATAGTGGAAAATCGCT # Right flank : TGTCTGATGACAGCAGCTTAGTTATGAATCACTTCGTCGCACCTCACGATTCCCTTTTGGGGTTTATACATATACGGTTTGTATCAGGATCTTCGTTGATTGCGATGATATGGAGGAAAGGCCATGGACCAACACTAACCGTTGCTTTGTTGTAGTTAAATCTGGAGAGAGGGGATAATCTCTTCTATCCTTCAATTTGGGCTTTGTATATTATAAGTCTGTCGCCTTCGTTAACAATAACTTGATCCAGTGACTCTGCATTTTTAATACGATAGATTTCAGTTCCTATTGGAAGTTTAGTAGACATACCATTTTCAAATTTTGTTCCTTTGGAATAATTACTCTCTATTACTCCTAATCGTTCACCACGTTCATCCTGGTTTTTTACTTCCTCACTTCGAGCATACACCCGATCATCGAGAACAAAAATATCCGCAGATTGATCATCCTGAATGATTTCTTTTGCCAAATTATCACCAGAACTCGTTGCCGTATTAATG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 60166-60377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALFC010000016.1 Litoribacterium kuwaitense strain SIJ1 NODE_16_length_76349_cov_89.7779_ID_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 60166 32 100.0 35 ................................ CACTCCTCTTTGTAGCAGGAACTAGCCCTGATGTG 60233 32 100.0 33 ................................ GGCTAGTAATGGTGGTGAATAGATTGAATGTAT 60298 32 93.8 16 ...........................A..G. CACCGCCCGAATCTTT Deletion [60346] 60346 31 75.0 0 .......T....T.C...-...T.T.CT.... | A [60367] ========== ====== ====== ====== ================================ =================================== ================== 4 32 92.2 28 GTCGCACCTCGCGTAGGTGCGTGGATTGAAAT # Left flank : GTTGCCGACCTTGGTGGAAAAGCACAGATCGGCTACATGACCGGACTCTATTATTTCTTCTCCATGGCTTCGTCCCTCATCGCCCCAGGACTCGCCGGACTGTTTATGGATCTGTTTACATTACCTTCATTGTTTTTCGTAGCTTCCATCAGCTTTGGTCTAGGTTTTGTCTTTTTAAATGCAGGGGCAAAAAAGACGACTAAAAGTGGTACACAGGTTGAGGCATAGTCAGTTTTCGTAAAATCATCAAAGGCGATGCTTTAAAAGCAGATTCATTCTTTGTATACTATTAGGAGCTAAGTGTCTTATTCTAAAAAAGTGTGAAGGTTTGGTGCGAACCCTAAGCGAACATGAAAACACTGGGGGGTTCGCACCAAAAATGTAGCAGAATTTAAGTAGATATGGAGAAAAACGTGTTTGGAAAAGGGGGATTATTCCTTTTTAAAAAAATTTTTGCTAAATATGTAAGTTCATTTACCATATTTTAGTCAAAAATCGCT # Right flank : TCTAGAACCGCAACCTATGGATTTTAAAACGATCATCTGCAATACTTACATAGATGCGCAGAATGCGTGTGAAACAATATTATTGCGAAAAAGGAGTGATACCATGGGCCAGGCAGACGTACAGTATCAGCAATTGCTTCAGGACATCATTGAACATGGCACGTGGGATTACGGTCAGCCGGTGCGTGCGCGCTGGGAAAGTGACGGCGATCCGGCATATACGAAAAGTGTGATTGGCCGGCAAATGCGGTTTGATAATTCGGAGTTGCCGATTTTAACGTCGAAAAGTGTTGCTTTTAAGACGGCGGTGAAAGAGTTGCTTTGGATTTGGCAGAAAAAATCAAATCGTGTGCAGGACTTGCGCGATATGAATGTGTCGATTTGGGATCAGTGGGAGTTCGCAGAAGGTCCATGGAAAGGGACGATTGGGCCCGCTTATGGCTATCAGCTCGCGAAGAAAAATCGTCGTTTACAAGGAGCAATGGTTGATCAAGTCGATT # Questionable array : NO Score: 7.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:-0.59, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18508-17620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALFC010000007.1 Litoribacterium kuwaitense strain SIJ1 NODE_7_length_109733_cov_96.8028_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 18507 29 100.0 37 ............................. GCAAAAACCGAAGCACCGCAACGGAAGTCTTGGAAGC 18441 29 100.0 39 ............................. CGTAATACGGTTTATTCGTATCGTCTATTGCGTATCCGT 18373 29 100.0 38 ............................. AATAGAGTCGTATTTTTAGCCAACAACCCGCTATCCGA 18306 29 100.0 38 ............................. TTAAATTGACGTGATCGAAATATTCGTGCGCGTCTGCC 18239 29 100.0 37 ............................. ATGAGGCGTACTGGTTGACGGCTAACGCGTTTGCTAG 18173 29 100.0 37 ............................. TCAAACAAAAAGCGTAAAAAATGTAAGACTCGAAAGC 18107 29 100.0 36 ............................. ATAATATCAAGTTCTTCATTTTGCGTGTTTTCCGTT 18042 29 100.0 35 ............................. TTTTTATACATAAGCTCGTACACTTGGTTAAATGG 17978 29 100.0 36 ............................. CCCCGACACCATTAAGCCGTTACAATTGATGTATCC 17913 29 100.0 39 ............................. TTGAACGCTTTTTGCGCGGTGTCTTTGATCGACTCACCC 17845 29 100.0 36 ............................. TTGGTATACCTAAACCACATGGATAGGAGGGTAGAA 17780 29 100.0 39 ............................. CTGATGCGTCACTTATGGCAGGTGGTATGTCTCCAACTG 17712 29 100.0 37 ............................. GACCCGCGGACTTTAGTGCAAGAAGTCGACAGCTTCG 17646 27 93.1 0 .....................--...... | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 99.5 37 GTTTTATCTGAACGTAGTGGGTTATAAAG # Left flank : AAAAGGGTACACAAAATCAATGAACATGTCTCGTGTGATCAGCTACGGGTCGTTGTTGACAGCACAAATGGAGGGGCGCGAGCAGAAGTGATAGAAGTCAGAGTGTACGCATAAAAAAGTATGTTTAAAAAATCGAGATGAAAAGAATGTACTAGCAGTGTCGTTACTCTGAAGCTTTACAGAGTAACGACATCATTATTTGAAAAAAGGAAATAACAAAAAAAGTTTTGTGTACAGTCAATCATAGGACTTTAGAAAACTTGTATGGTAAGCTAGAAACTAATCAGGAAACGTTCGAACGAAACGATTTGCCTCATTCTGCAGTGAATCGATTTTTTGGATAAAACGCTGAAAGCCATGGCGCTCTAAGGACACAAGCTAGATTAGAATGATTGTAAAGACACGACTGAAGGTTCACTGCAAAATGAAAAAGATTGTTTCAACGCCCATCTCCGCTAAACCCTACAGCGAGAAGGGCTTTCGTCGGGGGGATATGGAGG # Right flank : CATTTCATCTACAATTTCTGACGGTCAACATCGTTTCATCTGAACATCGTGGAGGAGTACATGCATGAAGAAGCGTCGTCTCTCGGCTTTTCTTAACGCATTTACGTATCGTCCAAGTTTTAACAGCGTCCTCCTTAGGCTCCTTAGGGGTTTTTTTATGCGTGGTGTGGTTTTACACTACTGATGGGGGAATTTACGCTTTTTTACAAACATGATATTGACAATCATTCTCACTATGATAGAATGATAAACATTATCAACGGTTCGTAATTGAGGTGCCTTTATGCGTACGAGGTATTTGCTGATCGCTTTAGTGGTGTTGTCTGTTGTGTCGCTTTTTGTCGGGGTGAGTTCAATATCGCCGACTGAGCTGTTTTCGATGTCGGACCAGCAGGCGGAAATTTTTTGGTCGATTCGGGTGCCGCGTTTGCTCAGTATTTTACTGGCGGGGGCGGGCGTGAGTATTTGCGGTTTGATTATGCAGCAGCTGAGCCGTAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 29726-28976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALFC010000007.1 Litoribacterium kuwaitense strain SIJ1 NODE_7_length_109733_cov_96.8028_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 29725 29 100.0 36 ............................. CCGGTTTGCTTCCGCCGTTAATACGCTCAAGAACCT 29660 29 100.0 37 ............................. CTTCGTCGTAATCCGGTTCCCGCGCGTCGACGATATA 29594 29 100.0 36 ............................. CAAAACTCACCTCAAGGCGTGAGCTATAGTGACCTG 29529 29 100.0 36 ............................. GAGGACATTACGAAGAAGGCGTTTCTTGTTACAGTC 29464 29 100.0 35 ............................. GTTTCTACTTTTTGTTCTAATGCTGAAACCCTAGA 29400 29 100.0 38 ............................. ATTGTCAAGAATGTCGCGTTCGTCTTTTCGGCAGCATC 29333 29 100.0 36 ............................. TCAAGACGGCACTTAAAACGGTGTCGCCGAGTCAAT 29268 29 100.0 36 ............................. TTGTGTGACGGTGAGGGAGAGATCACCCGCAATTCG 29203 29 100.0 41 ............................. GTGGTTTAGGTATACAAACGGTTTCCTAAACCGCAGGTCGG 29133 29 100.0 35 ............................. TTTAGACTGTCGATCAAATTAAGGCATACAAAAAC 29069 29 100.0 36 ............................. GCGATCTATTAAAAGCGACGTCGTATATGCGCGAGC 29004 29 96.6 0 ......................G...... | ========== ====== ====== ====== ============================= ========================================= ================== 12 29 99.7 37 GTTTTATCTGAACGTAGTGGGTTATAAAG # Left flank : TTCTTCTGAAGAAGCAGCTGTAGCTCTTGTGAAAGGATTCGACCGAGCATTAAGGCGAATCAGTAACTTACAAGAAACAGCAACCATTCACCTTTTTATGGCGGCACCAGCGCCATTTGCTGTTATGTTTGGCCAATTGTTGAATATCGTACCAGGTAAAGAGATTAAGCTATACGAGTATTCAAATGGAACCTATCAACCGACCATCGTTTTAGATTCCAATAAGGATGGGGAAATGATTATAGAGGAACCAATGTCAACATAAGGATAGGTCATTTATAGAAAATCTAGGTGTATTGGCCTCTGAATTGCCTCATTCTGCAGCGAATCGTTTTTTTGGATAAAACGCTGAAAGCCATGGCGCTCTAAGGACACAAGCTAGATTAGAATGTTTTTAAATACACGACTGAAGGTTCACTGCAAAATGAAAAAGATTGTTTCAACGCCCATCTCCGCTAAACCCTACAGCGAGAAGGGCTTTCGTCGGGGGAATATGGAGG # Right flank : TTTTTAGCTTAGCTTAGCTTTGTCTTTGTCGATCTCTTTTTGTTTTTCTAAACGTAGTGGAGTAAGTCTCCTGCCCCCTTAGCGCTTGAAAAAAACCCAAGTGTTCTGAAAAACCCCATGATGCAGTGTTGATTGACAAAATGTCTACTTGGAGGGAAGTCTATTGAACTCAGATATTTTAAGCGTGCTCGTTGTAGACGATGAACTCCCAATTCGCGAGGATTTAATCAATTTTGACTGGGAACGTTGTGGCGCTGTTTTAGTAGGTGATGTGAGCGATGGAATGAAAGCGCTATCTTTTTGCGAGGGTTATAAACCAGATATTGTCATTACAGATATTACAATGCCTGTCTTGGACGGTTTAAAGCTCACAAAAGCACTCAAAGAAAAATATCCGGAAACGCAAGTGATCCTTCTCACTTGTCATAGCGATTTTGATTATGCGCAAAAAGCAATCAAGCTTGGAGCACTGGACTATTTGGTGAAGGTGACGTTAGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 37022-37376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALFC010000007.1 Litoribacterium kuwaitense strain SIJ1 NODE_7_length_109733_cov_96.8028_ID_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 37022 29 96.6 36 C............................ TACAAAGCAGGGTTGAAGATATCTTGATAAACCACA 37087 29 100.0 36 ............................. TTCAGTAGCTGTAGATAGTGAAGGGTATGTCTATAG 37152 29 100.0 36 ............................. TAAGCAATCCACCGTTAGGCATCGATATTTGAACAG 37217 29 100.0 36 ............................. CGGTTCTCTACATCAGCTCTTTTATGGCAAGGGCGA 37282 29 100.0 37 ............................. AGCGATCACAGGATAAAGTGCAGGGTTTGACAGCCGC 37348 29 96.6 0 .....................T....... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.9 36 GTTTATAACCCACTACGTTCAGATAAAAC # Left flank : AGCTCAGCTTCTCTCTTTCTCATCTCTTCCGGGAAGCACTGGGGATCTTGAATAGACCGCCAAACATAGCGCATCATCCCTTTGACAGCAGGCGCCCTGAGTTCTTGCATGCAATCACCTGGTTCAACATGAGTTCTCACATCTTGATGGTTCACTTCAATCTCCACTCGTGAGTGAAATGGAGTCGCTTTCATCAGTGTTTCCACAGATAAAACCTCCATCGAATCCCCCCTGCCAAAAGTCTTATATTTATTCCATTTTTACACATGTTTACCATATCACAAGAATTCGATTTTTGCGATAGATTCATAGAAATACAGCTTAATTTATGCCTCAAAGGACGAGATTGGCATGTTTTCCTTGAAAAGTCTAAAAATTCTCACAGAATAAAGTCATGTCACAAACTTTAAATAGCCTGTTTAGACGAGACGACCCTTTAGAAAATCGGTGAAAACGATTGAACCACTACGTTCAGATTTTTTGCAATGAGTAACAATCTG # Right flank : CGCTCCAGATCAACCCGATGAAATCCCTTCTCGCTGTAAGGTTCAGCGGAGATGGGCGGTGAAAAAATCTTTTTCATTTTGCAGTGAACCTTCAGTCGTGTTTTTAAAATCATTCTAATCTATCTTGTGTCCTCAGAGCGCCATGGCTTTCATCGTTTTATCCAAAAAATCGATTCGCCACAGAATGAGGCAATCCATTCCTAACACCCTTTGGAAGATCATAAAAACAAGTCGATGTCGCTTTTCTCATGCCCATAAACGATCTTTTTTATATTTTTCGGGTTTGCCACTTGATATAGGTAGATTGAATCAACATCATAGTCTACGATACGATCGAGTTCTGCTAGACATTGTTTTAGCTTTCCTTGAGTGATTTCTCCTTCAAAAACTGAGTTTTGCGTCCAGTCTAAATACTTCCGGAGCTTCTTACAAACTTTACCAACACGTTTTTCACCGACATCGTAAGTGATGATGATAAACATGTTTGTTACCACCAAGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAACCCACTACGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 4 51584-52657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALFC010000007.1 Litoribacterium kuwaitense strain SIJ1 NODE_7_length_109733_cov_96.8028_ID_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 51584 29 100.0 37 ............................. TGCCATACAGCACAAGTTTTTTAAACTCTGTGATTGG 51650 29 100.0 37 ............................. TTGAGTTGGGGTGTGTCGAAGGAAATCTTGACAGTCG 51716 29 100.0 38 ............................. TCTGTTGGATTTAACTTAGCTAACCTCATTGCTTGTTT 51783 29 100.0 38 ............................. TAATGGTGAGCCTGTTTATACAGTCGAAAGCGATAGGC 51850 29 100.0 39 ............................. ATTTTTTAGGTGTGACGTCTTCAGCCTTAGGCAAACTGT 51918 29 100.0 35 ............................. CCATCTCAATGATCCAGGCACCTTGCAACGACTCA 51982 29 100.0 35 ............................. TGATATTCGCAATCTTGCAAATGTTGAATCTGGTG 52046 29 100.0 36 ............................. CTAATTGCTGCAAATAAGCAAAACGTTGCATTTTTT 52111 29 100.0 35 ............................. AGTGCCCCTTGTACTACTATGTGCTGCGCCATTAC 52175 29 100.0 35 ............................. CAATCATTAAGAGATTTTATTGAATCTAAGAAAGT 52239 29 100.0 35 ............................. AGAAAAATGCGAAGCAAAGGGATTTTGAGAAAGAT 52303 29 100.0 35 ............................. TTGTATACGATATGTATAAGTTTATAGCAGATCGC 52367 29 100.0 35 ............................. CAATAACTCTTATGCGTCAACTAGCATTATCAACT 52431 29 100.0 36 ............................. AACTGTGCTCGCCATTCTTTGATCGATTGGCTTATC 52496 29 100.0 37 ............................. TGAGGGGGGTGTTTCGTATGGCCAAGCCGTCGAAGAA 52562 29 100.0 38 ............................. TTTAAAGACGAACCTAAGCGGAGTCATCGCGCAAAGGT 52629 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ======================================= ================== 17 29 99.8 36 GTTTTATCTGAACGTAGTGGGTTATAAAG # Left flank : AACGAGCTAATGCATTCACTTGATACTTCATAACCCTCTCCTCTCGAATCATCTTCACAAACACCCTTACACATTGGACAGAAGTGCTGTCATTATAAACGAACAAAAGAACGCTGTTATTAAGAACGAGAAAATTGTGACTTAAAGCAACGATTTTATGACTTTCATATGACGATCAATAGGACTTTTGTCACCGACTGATTCAAGTGACCGAAGATTGTTTAAACAATAGGCATCCTTCATTAAGATAACGAGGGACAGGGATTTTATGGTATGATAGATGAAACAACGTTAGAAACAGTAACAATTTGTTTAAATTTGCAGCGAATCGGTTTTTCGGGTGAAACGCTAAAAGTCATGGCGCTCTAAGAACACAGACCAGATTAGAATAATTTTAAATACACGACTGAAGGTTCACTGCAAAATGAAAAGAATTGTTTCAACGCCCATCTCCGCTGAACCTTAGAGCGAGAAGGGATTTCGCCGGGTGGATTTAGAGG # Right flank : TGAAAGTAGTACGCTATAAAAACGCATCGCTAAAAGTGAGGCACGAGCCTCACTTTTTCATATTCCATGGTTATTCTTGTTCTCACTTTGAAAATGCCATTCTGTTACAAATCATCAATTTTTTTTGATGATTTAGGTAGTGGCTTAACGTACGCTTACGAAGATGTTGACAAATAAAAATATTTTCTCTCAAAAAGCCCTCATCCTTGCTCTCCTCAACGCACGACAAACAGAGAAAGAGAAGGGGAACGCCCTCCCCTTCTCACACATGTCTCACTTTTTATGAACATCGATTAATCCGAATTTTCCAGCGAGTTTCTCTAACATATCTTCGGTCATTTTCGCTAAATGATAATCCGTTTTAAATCCCCATTCTTCAATGGCGCAAGATGGATCAATGGCATTTGGCCAGCTTTCGGCAATTTGCTGCTTGATGGGATCAACGTCATAGCTTAATTCAAACTGAGGTATATGTTTTTGATCTCAGCCGCAAAGCTTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 4245-6294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALFC010000022.1 Litoribacterium kuwaitense strain SIJ1 NODE_22_length_62199_cov_80.69_ID_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 4245 29 100.0 39 ............................. AGTGACACGGATTCATAATGATCAAGGGGCGCTTAAACG 4313 29 100.0 37 ............................. TGATACTGGTAACCCGGGTAGCTCTGCTAGAGCCAAT 4379 29 100.0 36 ............................. TTGTACAAGTAAATGGCGATGAGGCGACTGTGAAAA 4444 29 100.0 38 ............................. AGTTATACAGTCATGAGGATTTGATATTCAACAACAAG 4511 29 100.0 38 ............................. CCGTCATAGGCGACTTATCGTTTTCGTTATTTACAAGT 4578 29 100.0 39 ............................. CCGGCTTCGTTACGATAGGCGAAATGATATTACACGCGA 4646 29 100.0 36 ............................. TAGTAGGACTGAGGTTCTGTGCGATCTCGGAACACA 4711 29 100.0 35 ............................. CGGTCTACTATATCCTCAAGAAGTCCTTCTAGTTC 4775 29 100.0 36 ............................. CCTATTTTTAAGGCAGTGTTTAGTCACTGCCTTTGT 4840 29 100.0 37 ............................. GATAACGAGCCTCCTGCATCGTACTGGGGTCATTATC 4906 29 100.0 36 ............................. TTGGATACATAGACGCTCAGATCATCGATGGAAATG 4971 29 100.0 33 ............................. GGTAATTTCTTCGAGGATTGTTCTTCCCTACAG 5033 29 100.0 38 ............................. AAAGCTCAGGATTTTCGTAAATGTTTCCAACGATCTCG 5100 29 100.0 36 ............................. CTTGGACATCATGCTCAATCCCGACGAAGATAATCT 5165 29 100.0 36 ............................. ACAAGCGCTAGTGTCCGTCCTGCTGCTACGAGTCAT 5230 29 100.0 36 ............................. AGTTGTTCGACATTCGTGTTTGCGCTAGATGCGGCT 5295 29 100.0 36 ............................. GAGGTACAAAGCAAACACCTCGATATGACGCTAAAA 5360 29 100.0 36 ............................. TTAGTGTCAGTAGTTGTCACTAATGAATTAATATCT 5425 29 100.0 36 ............................. ACTGATTTTCCAATATTACCAATCACTTCTGATTCA 5490 29 100.0 35 ............................. AATCGATATGCCTCGACGTTTATCCCTAGCGAGTG 5554 29 100.0 35 ............................. TAGATTCAGGATCAGCTAGCTCTTACGAGTTAAGG 5618 29 100.0 35 ............................. TTTTCTGTAAGGTACGAGAAAGTGTACCTTTTTTG 5682 29 100.0 36 ............................. GTAGGCAGGTCGAAAAATGGGTTTTTCGACAGGACA 5747 29 100.0 36 ............................. CATAGTTGCCTGCGCCGGTGTCTTGGCGTTCGATGC 5812 29 100.0 37 ............................. TCGAAATACTGGGCAAACCAAGAAAAATCTTGTTTTT 5878 29 100.0 36 ............................. TCATGGTCAAAAACTTTGACCGTAGCAAAGACGGCG 5943 29 100.0 35 ............................. TGTCACAAGCGGATTTTCGAAAATCGAAAATCAAG 6007 29 100.0 36 ............................. TCAGACGGGACAACTACGCCGTCAGCGCCTGCCTCG 6072 29 100.0 36 ............................. CAATTTTCACATACTCTTCCCCGTCTTTGTTTACCC 6137 29 100.0 35 ............................. CAGATTCGATCAAACGCTCCTTCGCCTTCTGACGC 6201 29 93.1 36 ........A...............A.... TATGTCGATATTTACGAACTTGTTGTATTCCTTGAT 6266 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ======================================= ================== 32 29 99.7 36 GTTTTATCTGAACGTAGTGGGTTATAAAG # Left flank : CCGAAATGTCCTCGCGATCGTAGCGTTAGAAAACTTTTCGCTGACGACACTCTTGTTTCCCGTTGTCGCCTCCGGTGCTTGTCTCGTATTGTTGAGCGTCATTATCACGCGGCGGCGTATGGTTTCTTGATTCTCTAGAGGTGGGTCGAAGGAAAATTGAGAGGTGGGAAAATAATCCATCTAGGGTATCGTTGCTATGATGTTGTCGGAAATGAGAAGTGGCTGAGGAAAATAGTCAAACATGCAGCGCCATATTTTTCCCAAAGTTATGATAAGATGGAAGCAACAGATGATCCGAACATAACGATTTGTTTCTTTCTGCAGTGAACCGATTTTTGACCTAGAGCGCTGAAAGCCATGGCGCTCTAAGGACACAAGCTAGATTAGAAAAATTATAAATACACGACTGAAGGTTCACTGCAAAATGAAAAAGATTGTTTCAACGCCCATCTCCGCTGAGCCTTACAGCGAGAAGGGATTTCGTCGGGGGGAAATGAAGG # Right flank : GACATAAATGGACACAACGGGGGAACATCAAAAAAAACAACGACGTCTTTCGTATAAGAAAGGCGTCGTTTGCATTTTCTAAACATGTCACATCATATGTAGATGGGGTCAGGCTTTATGGTCTCCCGTCCATGACCTTCATGAATTCCCTCAATGGCTTTATTCCCGTTAATAAATAGAAGCCTGCTGATGTGAATGCAGCTTCGTGAAGAGTCCGTCTTTGATGGAGAGCAGTTCTTCATGAGTGCCATCTTCGGCAATACCGCTTTCGTTAACAACGAGAATGCGATCGGCGTTGCGGATTGTTGCTAAACGGTGAGCGATGACGAGTGTCGTGCGATCTTTCGCTAGCTCGGTGAGTGCGTCTTGAATCAGTGCCTCGGTTTCTGTGTCGAGTGCGGAAGTGGCTTCATCTAAGATCAGAATGCGCGGGTTTTTCAGAAACATTCGGGCAATAGAAAGGCGTTGTTTTTGCCCGCCTGACAGCTTCAGCCCTCTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 16301-16676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALFC010000025.1 Litoribacterium kuwaitense strain SIJ1 NODE_25_length_50351_cov_90.4301_ID_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================== ================== 16301 32 100.0 34 ................................ AAGCTACCCCGATCGCAAGGGCCGGCTAAATTTT 16367 32 100.0 34 ................................ GGAATAAACGTCCCCGAAGTCCTCCGGCATATTT 16433 32 100.0 33 ................................ AACATTCCTTGAAGAATCTTAAAGATCAGAACG 16498 32 100.0 36 ................................ CGCCCGCAAAGTGGTTACTATACGAATGCGGATAGT 16566 32 93.8 46 ........................G.A..... CGCCCGTAATTAGCCGAAACCATCTTTAAGTGGTATAATGAAAATA C,T [16592,16595] 16646 31 78.1 0 .......G......A.......C..-AA...C | ========== ====== ====== ====== ================================ ============================================== ================== 6 32 95.3 37 GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Left flank : TAATTCAATTTACTCATGAATACTTTACGTTACTAACCTTTGGTCAAACAGGACTCATCGGCGTGCTCATGCCCATATTCTACGGTTTAATCAGTTTCATATTGATCATGTTAACAAAAAAAGGGACTCTAAGAATGCTAGTCCTTATTTTTGGTGCCATGTCCTTATTCTTAAATGTGATTATTGCCTTTGTTGCGATATTTGGCTTTAGAGGGCCATAAGCTTTACGCGAATACTGTTGGAATGTATAAAGAGGATAGACGCTAGACGCAAACATAGGGTGAAATAGCATTTACTTCTATATAATAGACGAAGGGCAAGAGAATTAAGCGGTGCGAACCATAAGCGCACATAAAAACCCCGGGAGATTCGCACCAAATTCTTAGAAAAAACCTTCCGTATGATTGAAGAAAAGGTTATAATTTACAATTGAATGAGCAAGAAGCTTCGATAATGCCGTATAACAATGAGAATTCCCATTTTTAAGGGGCATTTTCGCT # Right flank : CAAAACATCACACCGTGTTGAAACTAAAAACAGGTGATCCTTACATGCAACTGATGTAAGGATTCACCTGTTTCTTTGATCTAAAGCTTTGTACTGATTGTAGGAAAAAGACAGTCAAAAAAATTGAAGTGAGGCGGTCAAGAGATGAATAGTGAATTCCGGCAACAGCTTCTGCAGATGCAAAAGCAAGATCTTGAGGTGAGGGAGCGGCTTCTTAACGCTGGTGAATTAAATCGCGGCTACCATCCAGAGATGAAAAGTGTTCATGATGACCATCAAGCCAGGTTAGCGTCTTTGATTGAAATACACGGTTTTCCAACGATTTCGCTCGTTGGTGAAGACGGTCATAGGGCGGCGTGGCTCATCATTCAACACAGCATCAGCCATCCATCTTTCCTAAAAGAGATGCTGGCACAAATGAAAGCTTTTGGTCGGCATCAAGTTAACCGCACTTACGTTCCCTATCTTGACGATCGTATTCATTTTTATGAAAGAGCGCC # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //