Array 1 256078-257326 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMT01000001.1 Escherichia coli strain MOD1-EC5254 MOD1-EC5254_1_length_402526_cov_23.4147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 256078 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 256139 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 256200 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 256261 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 256322 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 256383 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 256444 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 256505 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 256566 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 256627 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 256688 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 256749 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 256810 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 256871 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 256932 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 256993 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 257054 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 257115 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 257176 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 257237 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 257298 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 275405-276225 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMT01000001.1 Escherichia coli strain MOD1-EC5254 MOD1-EC5254_1_length_402526_cov_23.4147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 275405 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 275466 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 275527 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 275588 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 275649 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 275710 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 275771 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 275832 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 275893 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 275953 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 276014 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 276075 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 276136 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 276197 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //