Array 1 43-700 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPT01000031.1 Pokkaliibacter plantistimulans strain L1E11 contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 43 36 100.0 33 .................................... GAACGGCAGATCGATACCGCTCTTACCGAAAAC 112 36 100.0 34 .................................... TCGTATCCGTACCCAATAGCGCCGATAACACCGT 182 36 100.0 34 .................................... GCCTGATTGACGTCGTAACGGCCATGCTGCTTCA 252 36 100.0 34 .................................... GCAGTGCTATTGCACTACCGGGTCGCTGTGCTTT 322 36 100.0 33 .................................... CCAAATTCATTGGAGCGTACGTCCAGACGTTTT 391 36 100.0 33 .................................... ACACTCAGCTCAAGCGTAGGCTTAGTTTGCGGG 460 36 100.0 32 .................................... CATCAGTTCCTCCTCACCATAGCGAGTCTCGT 528 36 97.2 33 .................A.................. GTCACTGAAGTGACGGACTAGCTGGGTCATTGC 597 36 100.0 32 .................................... TGAGCTGTGCATTCAATGGATCAAGCTGTTGA 665 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 10 36 99.7 33 GTCCGAACCGAGCCCTGCTTTGAAAGGGATTAAGAC # Left flank : GAGTACACCGCGCCGGTTTGAGAACCTTAACGTGTGTTATACG # Right flank : CGCACCTGAACGGTTGATGAGGTCGAGGTAATCGTCCGAACCGAGCCCTGCTACAGGCATAAAAAAACCGAAGGTTGCCCTTCGGTTTTTTGTTTTTCGCATTCGCTGATTTAATTCAGCGAACTCCATAGCTCTTTCGCCGCTTTGGCTTTATTACGGTCGATACCCAGATACCCAAACACCGCTGTCAGGCAGGCTTTGGCTTCGGCCTTTTCCGCCTCTGACATGCCAGTAGCCAACTCTTTAAGCTTTTTAGCTTCTTCAAAAATGGGGTTGCCGGTACGGCTGTCTTTATAACTAGGGTGCTTTTTAGCCTGATCCGCGCTCATCAACTCCTGCACTTCCGTCAGGCATTGCTGGGCGGGCGTTAATGCTGCCATTTTTTGTGCTTTGGCTTCTTTGGCCTGGTTTTGTTCACGCTCGTAAGCATCCGCTGCTGACTCTTCCATTCGGCCAAAGCCGGTGGCCGTTTTGGCACCTGCACCTAACCATTCCAGTGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACCGAGCCCTGCTTTGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 14329-10203 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPT01000062.1 Pokkaliibacter plantistimulans strain L1E11 contig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 14328 29 96.6 32 ............................T CACGATCCGGGCGACTCGTCCCCGCCAAGACC 14267 29 100.0 32 ............................. CGCTTTGCCTCCGAACATCTTGGCAATGGCGC 14206 29 100.0 32 ............................. AGGTACTTTTTAGAACTTCTCAGCCTACACCA 14145 29 100.0 32 ............................. CCTGGCGCCTTCAATCTGTGCACTTCGTCTGT 14084 29 100.0 32 ............................. GTAATCCATTGTTTCGGGGTGCTCGTGCCCAG 14023 29 100.0 33 ............................. CCCAATAAGGCATTGGCTACCTTTCATTTTCAC 13961 29 100.0 32 ............................. CGTTAACAGTTTGGCGGATTATCTGGATGTGG 13900 29 100.0 32 ............................. CGGGTCCGACCAAAAATGGTAGGCGTCAATGA 13839 29 96.6 32 ............................A GCGGCTTCAGAATCCAGCTCACTTTCAATTGT 13778 29 100.0 32 ............................. TAAATTTCCTGATAGCTGCCATCGGGCCTGAT 13717 29 100.0 32 ............................. TACTGCAGGTTTACCAGGTATGCTGTGAAGAC 13656 29 100.0 32 ............................. CTGGTCCACAAAACCACAAAACGCAGTATCGA 13595 29 100.0 32 ............................. CACCTGAGCCATATCCATTCGCCCAGCCATTA 13534 29 100.0 32 ............................. TTTTGGAGGCGGAAAATGAAACTGATCACCGG 13473 29 100.0 32 ............................. GAATATCTCAACGCCTACACTGGTTGATACCG 13412 29 100.0 32 ............................. GGCGGTGATGGTGTTCTGAACCGCTCTGCTCA 13351 29 100.0 32 ............................. GCCAAACGTCTTGCAGACCAGCTAACTGGTGC 13290 29 100.0 32 ............................. CATCATGGGGCATTGATTACTCAGGTGCCGCA 13229 29 100.0 33 ............................. CCTCGCGATAGGCGCTCAAATGCAAAGCTGTAA 13167 29 100.0 32 ............................. AATTGCTGCATGAACCGCAGTGCCAAAATCCA 13106 29 100.0 32 ............................. ACTGATGGCCATCAGCATCAAGCGCTATGTCG 13045 29 100.0 32 ............................. GACTGCACTCGTCAGCTGCTGCAATTGCGCAA 12984 29 100.0 32 ............................. GCGTCGGCCCATGATATTGCTGGCCTCTTTCT 12923 29 100.0 32 ............................. GTCTGAGTAGCCGTTATCAGCATTGCCCGGAG 12862 29 100.0 32 ............................. TGCTGGAGCACAAGCTGAAGCAAATGCGGCTC 12801 29 100.0 32 ............................. TCAGGAATGGCTGTTTCATCGCTGGAAATCGA 12740 29 100.0 32 ............................. TCCTCACGGACCTCTTGCAATGTGGTGGTTGT 12679 29 100.0 32 ............................. TATCAGCTGAGGCAAATATGTCACCAAATGCC 12618 29 100.0 32 ............................. TCAGGAATGGCTGTTTCATCGCTGGAAATCGA 12557 29 100.0 32 ............................. GCACGCCAGAACATAGATAAGGCACTTGAGGA 12496 29 100.0 32 ............................. TCAGTCTGGACAAAAAAATACACCCTACTGGC 12435 29 100.0 32 ............................. CCGCTGGGCAGCAAATGACGCGGATAACAGGG 12374 29 100.0 32 ............................. CAGAGAGTCATCCAGATCTGTGATGAGTTCGG 12313 29 100.0 32 ............................. GTCGTGGCCGATTGGTTGCAGGATCAGGGCAT 12252 29 100.0 33 ............................. TAGCGCCATCGGATGAGTGGCGCAAATGGTATA 12190 29 100.0 32 ............................. CCACCTCACAACTCTCCTAAATTTCGCAGCCC 12129 29 100.0 32 ............................. AGCGCGCAGATGAGGATGGCGGCTGGACAATC 12068 29 100.0 32 ............................. ACCATGAATCCAATGATGACCACCATCCGACA 12007 29 100.0 32 ............................. TACACTGAACACAACTCGCAAGTATCATCAGA 11946 29 100.0 32 ............................. CTGACCGCTCAGAAACAAAAATATTGGCGCGC 11885 29 100.0 32 ............................. CTAGCGCCATGCTTCCATGTTAGATTGTTGGG 11824 29 100.0 32 ............................. AAAAACCTTGGCCGACGCCAGCGGTCACAGAT 11763 29 100.0 32 ............................. CAACGCTAACGCGCTGATGTGGGTGTTGCTGC 11702 29 100.0 32 ............................. AGAGGTTAGCCAGTCACAGGTTGATATGTTGC 11641 29 100.0 32 ............................. GTCGCCTTGGTCGCCCGCTGAATAACACCCAG 11580 29 100.0 32 ............................. TAGTCGATTCGTTCTATTCACGGGTGAACCAT 11519 29 100.0 32 ............................. GCTGAGTTCTATGATGACGTGGCTGATGCGGT 11458 29 100.0 32 ............................. GCTGAGTTCTATGATGACGTGGCTGATGCGGT 11397 29 100.0 32 ............................. ATAGATGGATTGGCATATACTACAAAGACGGT 11336 29 100.0 32 ............................. GTTCGTTCGCGTTCTGCATCCAGATAGCAGCG 11275 29 100.0 32 ............................. AATCGAGCGCATTTTCCGCGCGGCACTCCCCA 11214 29 100.0 40 ............................. TGCCCTTGTCCACTTGGCACAGGCCAGCGCCTGCGTAATA 11145 29 100.0 32 ............................. TCATCTGAACGGGCAGTCGCAAGGCCCAATTT 11084 29 100.0 32 ............................. GCTGTGGCAAAACCAGAAAACCAGCAGAGACA 11023 29 100.0 32 ............................. GAATTGAATGACGATAACGGAGAGTAGCAAGA 10962 29 100.0 32 ............................. CATCGTGCTCGCTTGCGCCAGATCGGCATCGA 10901 29 100.0 32 ............................. CATCGTGCTCGCTTGCGCCAGATCGGCATCGA 10840 29 100.0 32 ............................. GCACTCTCTGTGATGTGCCGGTTTGGATCGAG 10779 29 100.0 32 ............................. CCATTATCGAGGCTGACGATTACGATTCAGTA 10718 29 100.0 32 ............................. TCACTGCAGGATTTCATTATCTCCCTGTGTGG 10657 29 100.0 32 ............................. CCGCAACGCCTACTAACCTACTTGGAGTTGAA 10596 29 100.0 32 ............................. GGCTCACGTGGGCGCCCGGTAATGTCGGTATT 10535 29 100.0 32 ............................. GATTGGTCAGAGCAAAGCCGTGAGAATAACCC 10474 29 100.0 32 ............................. GAGGTTCTATGTGTGAACGTGAGTTCGAACTT 10413 29 100.0 32 ............................. CTCAACCACGGTTACTGACCCTGTAATAACGT 10352 29 100.0 32 ............................. CTCAACCACGGTTACTGACCCTGTAATAACGT 10291 28 89.7 33 .......................T.-.T. CCATTTATTAAGCAAAAGTTAACTTGCCCTTAC 10230 28 89.7 0 .......................T.-.T. | ========== ====== ====== ====== ============================= ======================================== ================== 68 29 99.6 32 GCGTTCCCCGCGCCCGCGGGGCTAAACCG # Left flank : AGACGTACTCGCCGCCGGAGAAATTGCACCGCCTGCCGCGCCTGCGGATGCCCAACCCCCTGCCATTCCCGAACCTGCGCCGTCCGGCGATGCCGGGCACCGGAGCCATCGATGAGCATGCTGGTGGTTGTTACTGAAAATGTACCGCCACGGTTACGCGGACGCCTTGCTGTCTGGCTGCTGGAAGTCAGGGCAGGGGTCTATATCGGCGATACCTCACGGCGTATCAGAGAGATGATCTGGGAACAGATCAACGCACTGGCCGAGCAGGGCAATGTGGTGATGGCCTGGGCCACCAACACGGAGTCAGGGTTTGACTTTCAAACCTATGGCAGTAACCGGCGTATGCCGGTGGACTGGGATGGGTTGCGGCTGGTGTCTTTTCTACCTGTTGAAAATCAATAGGTTAGCGCTCTTTAACAAGACGGAAAAATGATCGAATAGTTGGTGGAAATTTAGAGGGTGAAAAAGACCTTTAAAAACAATAGTATCCATCAAGT # Right flank : GCTATTGTCCTTCGTCGTTTTCCATGGTCTGTTTCGGCACTGGAAACCAGTAACCCACTACGACCAGCAGCAGACCGACGCCGATAAAGGACACCACCCGCGCCAGTGTGCCTGTACCATGCAGGTCAACAAGATAGAGCTTGGCCAGCACTACCAGCAGCAGACCAGCACCGGCATACCATACCGGGCGTGAGGCCAGCTTGCGATTGCCGACGATGGCCAGCGCCAGACCACAGAAGCACCAGAGTATCGACAGCCAGGCCTGCGCGGCGGAGCTGGCAAACAGCCCCCACAGGGTGTACGGCACATCCAGCCAGTGGTGCAGTGTACGCAGACCGATGGCTGACAACTGCGCCAGCCCGATCAGACCGACCACCAACCAGCCGCCGACACTGAGGCGTTCCAGTTGCAGCTGGCTGCGGGCCAGACAGAGCACAGCGGCGGCCGCCATCAACAGCAGATCAAGAGGGTTCAGCAGCGGGATGGACGGCCAGGGAGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCCGCGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCGCCAGCGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90-1146 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPT01000052.1 Pokkaliibacter plantistimulans strain L1E11 contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 90 35 88.6 35 G....T.G..T........................ ATCTAACCTTAGCCTTTTGATATAGTCGGCAGAAT TT,G [93,101] 163 35 100.0 41 ................................... TTGTAGATTTTCAGGAATGGATCAGCACAAAGGTATTCTAA 239 35 97.1 38 ..................A................ TTATATCAGCCTCATGAAGTTTCCGTTTCCGAAGTTCT 312 35 100.0 37 ................................... AAACCGCCTTGTTCAGCAGACTGCGTACTTCCTGCTG 384 35 100.0 35 ................................... TTGTTATCAGCATCGCCGGAATTCAGGATGTAACG 454 35 97.1 38 ...................C............... AAGCTGAAGGAGAAGGATGGTCGGGGATCGCGGCTAAA 527 35 97.1 39 ...................C............... CTTTCTTTATAGGACGATCACCGGTTGCTGCGGCCATAT 601 35 97.1 38 ...................C............... AGATCAACGCTGTCTCATAGTCGATAGCGTCCTTCGGT 674 35 100.0 40 ................................... ATGAAGCTGGGGGCAATTGCCATGGCGTAGTGAGAAAAAG 749 35 100.0 38 ................................... TGAAAGGCTATCCCGGCCGCCCATGAGTTGTTGCATAT 822 35 97.1 35 ..................A................ TCCAAACCACTCTTGAAGCGGAGCCCATACGGAAC 892 35 97.1 39 ............T...................... GTTATCCACCGTATGCGCCGCTTAGGCTCAACCAGCTTG 966 35 100.0 35 ................................... CCTTTCACACCTCCGCCTGACTCGAACTGCCAAAA 1036 35 97.1 41 ..............................G.... TTGTTCACGTGGTTTTCAATTCCAGCCATGGAACGGAAAGG 1112 35 85.7 0 .............................CTTTC. | ========== ====== ====== ====== =================================== ========================================= ================== 15 35 96.9 38 CCCGCAGACCCTCTGGCCGTTCAGGCCGTTACGAC # Left flank : GTTCAGGCCGTTCAGGCCGTTACGACATCATGTTTTACGTCCCCATGACAGTAATGCTGAGAAGACCCGCAGACCCTCTGGCCGTTCTGG # Right flank : CCCTTCCAGACCACGGTAAACGGTGCGGTTCGTGCCTCACCGTCACCGCAGTGAACCTCACCATCTGCAATATCCAATTCGCTGGTTGGCGGTAGCTCCCCCTCTCCCCCAGCCCCTCTCCCGCAAGGGGCGAGGGGAGCCTGTATCGTGTTTTGCTCATGTTCTGGTGACTAGCAATGACTAGCAGCCGGAGCGGCGCTGTGCTCTAGCATGTCGCCCGCTTTGCCGAGTGATTCAGGAAGAAGAGGAAACAGATAGCGCCTGAACTACCGCACAACACACATCGGTGATCCGGCAATCGGGTCGCGGTGGATTTCAGCATCAAGATCAAACACATCGGCCAGCAGTTGACGGGTAAGAATCTGCTCTGGTGTGCCTTCGGCGACGACCAGCCCTTCTTTCATCACGATCAGATGGTCGCAGTAGCGCGCCGCCTGATTGATGTCGTGCAGCACAGTCACCACGGTTTTACCCTGTTGATTTAACCGTCGCAGCAGTTG # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAGACCCTCTGGCCGTTCAGGCCGTTACGAC # Alternate repeat : CCCGCAGACCCTCTGGCCGCTCAGGCCGTTACGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 18528-13877 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPT01000140.1 Pokkaliibacter plantistimulans strain L1E11 contig_140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18527 28 100.0 31 ............................ CTCGTCGGCGCTTTTCCTATCCGGTGCAGGA 18468 28 100.0 32 ............................ GTCAGCGAGCACGTATCTGACGAAACCAAGCA 18408 28 100.0 32 ............................ TGGTACCGCGTAGCAGATGGTCTGCAATAATC 18348 28 100.0 32 ............................ GGTCTGACTTGTCGTCTCAGTGAGCTTCTCAG 18288 28 100.0 32 ............................ GTCATGGTACCACCGCCAACCGTGAACAGCCC 18228 28 100.0 33 ............................ TATTTGATTAAATGGTTCATCTGACCTATTTGT 18167 28 100.0 32 ............................ ATAGACAGCTTCAACTGCGGCCATCGTCCATT 18107 28 100.0 32 ............................ GGGCTGCGAGTCAAGTTTACGCAGTCGTTATA 18047 28 100.0 32 ............................ CTTCTGCCATGGCCTGCTGCCAGTCAGCGGTG 17987 28 100.0 32 ............................ TGATCGCATGGCTTGTCTCCTGGTAATAAAAA 17927 28 100.0 32 ............................ TGCTGGCTGCGGTGCGGGCGGCCGCTACTCAG 17867 28 100.0 32 ............................ GCCTGAGCCGTCTTATTCGGTTTGGTGCAGAG 17807 28 100.0 32 ............................ TTGATGGAATGGTCCACCATCTGGGCAACGGA 17747 28 100.0 33 ............................ AGTGATGTCAGCGGCGGCCAGCTGTCGGTTGAT 17686 28 100.0 32 ............................ ATCTGAGTGCGGGAAAACGTGGACGCTGCAAA 17626 28 100.0 32 ............................ TGACGGCCAGTGAACTGGTACGCCTCGATCCA 17566 28 100.0 32 ............................ TTGCGCCCTTTGTCTTTGCGGATCAGTACAGA 17506 28 100.0 32 ............................ GCAGAGAGGCAATGAAAAAAGTACTTGAGGTG 17446 28 100.0 32 ............................ AGCGAGATCAATGTGATTGGGTCCATGAAGAT 17386 28 100.0 32 ............................ TCACCATGCGGCTCCCAGTCAGAAAGGCCCTC 17326 28 100.0 32 ............................ GCCCGGTAGACAGGCGCTCCATCACCGTCATC 17266 28 100.0 32 ............................ TTCTGCCGCTGTCGCCCGCGCTACTTCGTCCG 17206 28 100.0 32 ............................ AGGCACTATAAGCGCTGGTCCAGGTCGCTCCG 17146 28 100.0 32 ............................ CAGTCATCAGGATAAAGCCCTTCAAGACGCCT 17086 28 100.0 32 ............................ GTTGAATCTCTGGCGGCCACTATCGAGCAATT 17026 28 100.0 32 ............................ TGCTATCAGGATGCGGGAGAAACCATTACGCC 16966 28 100.0 32 ............................ CTGCTTTTGAAGCCTCATCGCGAAACCAGGAA 16906 28 100.0 32 ............................ TTCACTATTGGCATCAGCAGGTGACCAATGTA 16846 28 100.0 32 ............................ TGAGTCAATGCCGTTCGCAACTCAGGACCATG 16786 28 100.0 32 ............................ TGACGTCATGCGCGGTTACTCTGTAGCAGAGG 16726 28 100.0 32 ............................ GACGCCCTGTTTTATCATGCTGACGCCGAGAA 16666 28 100.0 32 ............................ TATCGGCGCCAGCAGTGAGCCACATAGCGATA 16606 28 100.0 32 ............................ TACACTATTAATTGGTGGTTCCGCTGCAGGAA 16546 28 100.0 32 ............................ TAATAACTCTACAGTCACTATTAACCTCCCTC 16486 28 100.0 32 ............................ AGTATTCGCCAGGCTGGTTGGGCACTGGATGC 16426 28 100.0 32 ............................ TTGCCGCGCAGCGCCAGGGCCAGTAACTCCGC 16366 28 100.0 32 ............................ AGCTGGCTGAACGTCTGAATACACTGGCCGCC 16306 28 100.0 32 ............................ TGGGTAGTACGCTACGGGATTACCGATATCTA 16246 28 100.0 33 ............................ TAACAGTTTCGGGTCAGCGTCGGCTTTCTTGCT 16185 28 100.0 32 ............................ TTCTGTGCTGCAATCTTCCGACCCCTGGATTG 16125 28 100.0 32 ............................ TTGCGTCAAATGTGACGGGGCAGTCGGACCCG 16065 28 100.0 32 ............................ AGCGCACGTCAGTCGCGTGCTTCGGGGCTTGC 16005 28 100.0 32 ............................ AGAGTCGAGCGTGAGACTCCAAGGCGAAAAGA 15945 28 100.0 32 ............................ TAAGAGATTTACACCTGAAACGTAGGAACGAC 15885 28 100.0 32 ............................ GAAAAGCAAAATGACGGCGTTGATCGTTTTGC 15825 28 100.0 33 ............................ CAGGTGATGGGCGTGCTGGCGCTGTATTATCTT 15764 28 100.0 32 ............................ TTTAGAAACTAGATGCTGTTGAATGGTTTCTA 15704 28 100.0 32 ............................ TGCCCCTGAAACCACAAAAGTCCTATCGCAGC 15644 28 100.0 32 ............................ TGCCGCCGCTCAATGGCGCCATGGGGCAACAC 15584 28 100.0 32 ............................ GTACCGCACGGCACAGTGTGGCCCGCGTCACC 15524 28 100.0 32 ............................ CAAGTCATCACGCTGGGATGACGTGCAGAAAG 15464 28 100.0 32 ............................ TGTGCTGCTGCTTTTTTAGCAGTGTTAGCGCG 15404 28 100.0 31 ............................ AATCGTGCCACTCTTTTGCACTTTATTGACG 15345 28 100.0 32 ............................ GTGCTGCTATCGAGCGACTGCTGCACCTGGCT 15285 28 100.0 32 ............................ AGTTTAGGAATACAGCGCTGCATTAAAGTCAT 15225 28 100.0 32 ............................ TGAGTCGTCGGCGAGATCTAAAGCGGTCAATC 15165 28 100.0 32 ............................ TGCTGGCCCAGCAGGAGCAGGCAGAGAAAACC 15105 28 100.0 32 ............................ ATATATGGTTCTATGTTTTGCGCCATGTAACC 15045 28 100.0 32 ............................ TCCAAAGAGTTAGGTAACGCTAAGAACGTTTC 14985 28 100.0 32 ............................ TGAATCGGTTATCGATTTAAGCGCCTTTTTTA 14925 28 100.0 32 ............................ ACGGCGACGCACCAGAGCCTATGCTGAAACCG 14865 28 100.0 32 ............................ AGTCCTGCTTACTTTGCAGCAATGACCGAATA 14805 28 100.0 32 ............................ ATGTCATAAAAAGAGGCGATCATGAGCGATAC 14745 28 100.0 32 ............................ TGCCGGTTATGGCTACGCTGGAGGCTGCTGAA 14685 28 100.0 32 ............................ TCCACGCGTTTCACGATTGAATACATAGAGCA 14625 28 100.0 33 ............................ CAGCATTGGGCGCGTCAGTGACCAATGGAACAC 14564 28 100.0 32 ............................ AGTAGGCCGCTCGGCCCTCGAGGGTTTCTGGA 14504 28 100.0 32 ............................ GACAGGGCCATTCATTGCGCCGTAGGCTTGCT 14444 28 100.0 32 ............................ AAAATGGACACGCTGCATGGTGACGCCCGCTT 14384 28 96.4 32 .................T.......... TGCCCCGGACAACAGTGACTGATCCTGGCCTC 14324 28 100.0 32 ............................ GCCGGGTGTAGCGCTCGTTGAGTGCATGCAAG 14264 28 100.0 32 ............................ TTGCCGCGCAGCGCCAGGGCCAGTAACTCCGC 14204 28 100.0 32 ............................ TACATGGAGCAGCAGCAAGGCTTCACCGTGGA 14144 28 100.0 32 ............................ ACCAAGTGGTATCTGGCAGCCCGGCAGGGCAC 14084 28 100.0 32 ............................ AACACGCAAGAAAATAAAGAAGCCCATGATCA 14024 28 100.0 32 ............................ AGCTACACCGGTGGAGGTAGTAACGCCCTGAG 13964 28 96.4 32 ........................A... ATACATGGGAATACTGAATGTCTGCTGCCAGA 13904 28 71.4 0 ................A...T.TGTTTT | ========== ====== ====== ====== ============================ ================================= ================== 78 28 99.5 32 GTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : CGCACTGGACCAGCTAATGAGCCAGCCATGGCTCAGCGGTATGCATGACCATGTGGAACTCAGCGCATTGCTACCCGTTCCCGCTGATGCCAAGCACCGCACCCTGCGGCGAGTACAGGCGCAAAGCAATCCTGAACGCCTGCGTCGCCGACTGGCCAAACGCCATCACCTGAGTGAAGCCGAAGCCAGAGAGCGCATCCCTGATTCAGTGGCTCAGCAACTGAAACTGCCCTATCTGCAACTTCGCAGTAACAGCACCGGTCAACACTTCCGGCTGTTTCTGCAACTGAGTGCAGAGCAGGCAACACCACTCACAGGCACGTTCAACAGTTACGGCCTAAGCCAGACGGCCAGCCTCCCCTGGTTCTGACCCTTTTTTCCGGGCCTCTTATTGAGCCTATAAAAATCAAAGGGTTACGGCACACAACAAAAAAAGGGTTGTGCGCCGTTTAAAGGGGTTTGCTCTTTAACAATCAGGAAGTTAGGTTAGACAGGCTCTA # Right flank : GAAAACAGGCCGGGCCTTAGCCCAGCCTGGCTGCCAGCTGACGGTACAGCTCGGTATGTCGGTCCTGCTCCACACACAGCCCAAGCATATCTTCGATAAAACAGTGCAATGCTCTTTGCTCCATGCGCTCAATGCCCTGACGCTGATAATCCACCAGATGGTGATAGCGTGACGCGGCCCCCAGATCACCGAACAGCAGATGACCTGCGGGGTTAACCAGCACATTGTGGGCGTACAGATCACCGTGGCTGATGCCACATTGGCGCAGGTGTGCCACCACGCTTTCCATCTGTTCGACAAAGCCGCTGATGGTCGCGATGTCGAAGGACTGACCCGCCGTGAAGACATCGCGGGTACAGCTGGCAAGGCTCGGTGGCTGGCCGAGATTGAGGTAGTCGGCAGGGATCAGCTCCATCACCAGCGCCTCCTGCAGCTCACCCGTTACCCGTGCCAGCGGTGTAACCATATTCGGATGCTGGCCGATGGACAGGCATGCTTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33388-29161 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPT01000140.1 Pokkaliibacter plantistimulans strain L1E11 contig_140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33387 28 100.0 32 ............................ ATTCTGAGTGATGATGGTGTCGAGGCTTTGGT 33327 28 100.0 32 ............................ AGCCCTCCTCATACTCGATCAGACTGATGATA 33267 28 100.0 32 ............................ CACACGGGCGTAGTCTCTGGCGGCGATAATAC 33207 28 100.0 32 ............................ TGAGCGCGACGCGTTCAGGCGTGTGCGCGGTG 33147 28 100.0 32 ............................ TTTGAGTGTGCCATCATCCGCAGGATTGCGGC 33087 28 100.0 32 ............................ CTGATAGCGGGCACCGGCAGATGCGATAGGAC 33027 28 100.0 32 ............................ TCATCAGTAAACGTCCGCGCATTGGCCTTCAC 32967 28 100.0 32 ............................ ATGCCAAGTTGTTGCATATAATGGTAACCGCA 32907 28 100.0 32 ............................ AGGCGGTGCTGATGGTTGCGGCAGAGCTTGGC 32847 28 100.0 32 ............................ GTGGATCATTGAATTGCATTGCCTGGCAGCGG 32787 28 100.0 32 ............................ AAGAAAAATCGGGGTCCGTATTGTCATACAGC 32727 28 100.0 32 ............................ CAGGATCCTGCGGGTTAGTCTCTCCGCAGGAA 32667 28 100.0 32 ............................ GTGCTAGTAGTTGTCGTTGACGTTTCTGTTTC 32607 28 100.0 32 ............................ TGAGTATTGCCAGACGTGTTCACTGCCGTCTG 32547 28 100.0 32 ............................ AGACGTGTTCACTGCCGTCTGCAACGATGACA 32487 28 100.0 32 ............................ ACTACGAGGATGCCAGCATGATCAACGCACAC 32427 28 100.0 32 ............................ ATCGATAAAGTGCGGGCCGCGCTGGCAGATGG 32367 28 100.0 32 ............................ AGTGAAGTAAATGACAGCCTCTGCATCACCAA 32307 28 100.0 32 ............................ CAAAAACTCCCCGTCGCAGTTGGTTATCTGGT 32247 28 100.0 32 ............................ ATGGGGAGTTGCCGACGACGCCGGAAGAGCCG 32187 28 100.0 32 ............................ ACATCGCTGATACGCGTTGCAGCGGCCACGTA 32127 28 100.0 32 ............................ TCGCCACGACAAACCAAGCCAGCTATCCAGAC 32067 28 100.0 32 ............................ TTCCCCAGCACCAGTGGCACCGGGGTTTCGTT 32007 28 100.0 32 ............................ CAGGTCTTTAGCGTCAGACGGCCAAGTAATGG 31947 28 100.0 32 ............................ GTTTGAAGACACCGCTGCTAAAAAGGCGGTAT 31887 28 100.0 32 ............................ GTACCGCTCATCGTCGTGACGACAGTAATTGT 31827 28 100.0 32 ............................ TCACACAGTACGCCGGGGTCTACGGTGCAGGG 31767 28 100.0 32 ............................ AACAGGGTGGCCATTCAATTTATACGCTGCGT 31707 28 100.0 32 ............................ GCAGGGTCCGGCGGCTATCAACAGGTGGCCCA 31647 28 100.0 32 ............................ CAGGATCCTGCGGGTCAGTTTCTCTGCAGGGA 31587 28 100.0 32 ............................ TGACTGCGTTCGGCTTAGCGGTGGGCGATCTG 31527 28 100.0 32 ............................ GTTCAAATTCGTGTGGGCCGCGTTAAACACGA 31467 28 100.0 32 ............................ ACGTTACAGGCATTGGAGGAGAACCGCCGTCC 31407 28 100.0 32 ............................ GTTGGAGACGGTGTATTTGAAGTTGCCGGGGT 31347 28 100.0 32 ............................ TCAGCCCGGGCTGTCTGCTCGGTGGTGATGGC 31287 28 100.0 33 ............................ TAGAGAAAATGAAGGTGTTCCGCCAATAGCACT 31226 28 100.0 32 ............................ TACTTGCTGCGGGATAGTCAAACCATCTGGGA 31166 28 100.0 32 ............................ GATTTATTTGATACCTTTAAGAATAAATTCCT 31106 28 100.0 32 ............................ TCAATAGCCCGCTTAACGTAAACGGGTGAGGA 31046 28 100.0 32 ............................ TGCTGCTTGGCCAGCAGCGAATACAGGCGGGT 30986 28 100.0 32 ............................ GTCAGCACCCCGTCAGATAGGGCTGACTCCAC 30926 28 100.0 32 ............................ AAATGGGAAATTGAGCCGAAGTCTTCCGGTAC 30866 28 100.0 32 ............................ CCGGAGTTCCGGGGTAAAGTGTGGGTGTCACT 30806 28 100.0 32 ............................ TGCTAAGAGAGATCGCACAGTTCAAAGGTCAA 30746 28 100.0 32 ............................ ACTCGGATATCAGAGACGTTTTTAGGGGACTT 30686 28 100.0 32 ............................ ATCACACGAGCTACCATAGCAGCTGTAGAGAT 30626 28 100.0 33 ............................ ATTGTCGATGTGCGCTTGCCCATGAACAACCAA 30565 28 100.0 32 ............................ AATTCCAGCTCCTCCAGCTCTGGCACGAAAAC 30505 28 100.0 32 ............................ AGCTCCTGGTTGTTCATGGGCAGGCGCACATC 30445 28 100.0 32 ............................ AATAAGGGACGATATAAATCATCAGAGTTTAA 30385 28 100.0 32 ............................ AGATGGCCACTATTTCCCTGTGCTGCATCATG 30325 28 100.0 32 ............................ CTTTGTGCGACCATTGGGCGTATCACCTATTC 30265 28 100.0 32 ............................ TGGTATCAGGATTGGTACGACAGGGCCTGGCA 30205 28 100.0 32 ............................ ATTACGTACACGCGACTAGCACAAAGACGGCA 30145 28 100.0 32 ............................ TGCGATAGCGTCACGCGAACCGGTAGTGAACA 30085 28 100.0 32 ............................ TGCAAGTTATGCTGCTTACCGGGTCTCGGAGG 30025 28 100.0 32 ............................ TTCCATGTACCGCTGAGCTATCTGCGCCGGTG 29965 28 100.0 32 ............................ AGAAGGTAACGCCATCTGACATTCATCAACAA 29905 28 100.0 32 ............................ GAAAAAGTACGTAATACGGCCGTTAAGAATCG 29845 28 100.0 32 ............................ GCAAGAAATGCGCTTGAAATATACAGCTCATG 29785 28 100.0 32 ............................ ACTGGCTGTATAAATCATAATGCTTTGGAGTT 29725 28 100.0 32 ............................ TCGGCTCTGATTCGCACGATGCAAAGTTCACT 29665 28 100.0 32 ............................ GAAAACATCCGCTGCCAGCCCAGCCTTGTTCA 29605 28 100.0 32 ............................ TTCCGCATCAGTACGGACACCTTCAACACGAC 29545 28 100.0 32 ............................ AAGTGTTCAATCAATGCCGTAACGGTCACATC 29485 28 100.0 32 ............................ ATATCATCTACTTTGATACGTAGCGGGGATGC 29425 28 100.0 32 ............................ AGGTAAAGGATGTGCAGGCGCCTAAATGGGGG 29365 28 100.0 31 ............................ AAAATTCAGCGACTGACCTCCCCTCCCACCT 29306 28 100.0 32 ............................ AAATGCATCACGCTCGTCAAGAAGAGGTTTGG 29246 28 100.0 32 ............................ TGATAAGCGGAGCCTGCGTTATCCCTGGCAGC 29186 26 89.3 0 .....................-..-..C | ========== ====== ====== ====== ============================ ================================= ================== 71 28 99.8 32 GTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : ATCATGAATAAACCCTACAAACTGAACCTTATCCGCGGGCAAACCGCGGTCTGCAACAGGATACGACCGGAACTCCATACCATGCCGCTGCGCCAGTGACGCCTCCTGCTCCAGCCCCACCTAACAGGCTTCATGCCACTCCAGCAACGACACCATCAGACTGATGCCGGAACGGGCAATACTGGCAAACTCCTCGTCAACCCATTCACCGGCAACAGGTTTGGCCATCACATACAGCTGCCCAAGGCCAAGAGCGGCAACGAAATAGGGAATTGAGTTCATAGGGGAAGACCAACGAAAGATTTGAATACCAGGTAGTTGATCATCACAGTGGCAGAGGTACGCACTGCTGGCTAACCTTGTAGCACACCCTTTTTTTGACTGCGGTTCTCTGCGGTATATAAATCAACAGGTTAGCGAGTGCGTTAAAAAAAAGGGTTACTTCCATAAAATGGCACCTTGCTCTTTAACAATCAGCAGTTTATACAGACTTAGCTCTA # Right flank : CCATGGATACCCTTATGGGGTATCCATGGGCTATTTCATTCAGTCAAACGAACAGGGTAATTGGCATGACTTGTCAGAAATGACATTGCCATTTTGGTCAATCTGAAAATGTATGCGGAAAGCTGTTCCAGCAGGATATGGACGTGGCCCAATCCAATCGACTGGATGAATTGAAGGAGTCTCTTCATCGCTCATTGCTGACCTGAATACGGTCAACCCCATCTCGCTGCCAGCAGACTCGCCTGGATATATTCGCGTTGTTTGTGTTTCGCCGGGAGAAATATTAACCAGTGATGTTTTATCCTCCCCTGCCATAAACTCCACTACCGACAATGGCTCAGCTCCTTTAGGAGCAACAAACTCAACCTCCACATAACTCACCGGGCCTGCAAGCCGGAAATACCACCACGTTACTGCCAGTGCGGAAATAACTAGCCCTATTACGTATTTCATCGCTCGTCCCTGAACACTATTTAAGTGGGCTGTTTAAAATGCTGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 582-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPT01000091.1 Pokkaliibacter plantistimulans strain L1E11 contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 581 35 97.1 40 ............C...................... AAATTCCAGCTGGTGAATGGTTGGAACTTCCAGACTGTCA 506 35 97.1 36 ............C...................... GAATCACAATTACTGCCTTTTCAAGATGACACAACA 435 35 100.0 38 ................................... TCAAAAAATCTTGTCTTGGGCAAAGGCATAGTCTTTCT 362 35 100.0 39 ................................... ACTCTGGGAGTGCGGGGTCATTGAGGAAAAGTGAGTAGG 288 35 100.0 38 ................................... TTCATCGAGAGTGGGTTGATTGCGTGCCGACGTCGTGG 215 35 94.3 33 ...............................G.C. GTTCAGGCCGTTCAGGCCGTTCAGGCCGTTCAG C [185] 146 35 88.6 39 G......G..G..C..................... ATCATGTTTTACGTCCCCATGACAGTAATGCTGAGAAGA A,TT [130,141] 69 34 88.6 0 ............C.........T.......-..G. | T [38] ========== ====== ====== ====== =================================== ======================================== ================== 8 35 95.7 38 CCCGCAGACCCTTTGGCCGTTCAGGCCGTTACGAC # Left flank : CAGCACAAAGGCCGCAACCGCTATTGCCATCACCCCGACCAGCTGGACTGGCCATTGCTGGCAAACCGGCTGGCGGACAGCTTTATTACACTGGTGCAGCAACACAGCGGGCAACGCTACAGCCGTCCGCACTGGCCACAGGCCAGTATTCAGGTGCACAGCCTGCGCTGGCAGAGCGTGCGCTATAGCGAGATGCCCAATAAGGATATGGGCGGAGCACTGGGCAGCCTTCACCTATACTTGCCCAACGCCCTGCCGCGCTGGGCCTGGGCACTGCTGATTCTGGGCCAGTATCTGGGTATCGGTCAGGGCCGGGGCTTCGGGCTGGGGCAATACCGGCTGCAGCCGGAGCTGACATTGCTAAGGGAATAACCCTGCCGCTGGCTTCAGAGCCACGGCATTGCTCTTTAACAATCTGGATAGGGGATGGTATCGGAGGATGGCCGTTCAGGCCGCTACGACGTTCAATGAACGTTCGGCCTCCGTCACAAATGTCGTCT # Right flank : CCGTTCTGGCCGTTCAGGCCGTTACGAGTACTGCA # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAGACCCTTTGGCCGTTCAGGCCGTTACGAC # Alternate repeat : CCCGCAGACCCTCTGGCCGTTCAGGCCGTTACGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 10897-11347 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPT01000091.1 Pokkaliibacter plantistimulans strain L1E11 contig_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 10897 28 85.7 43 .AGAA....................... CTGCGGGACGTAAACTTGCCGGGCATATTCTTCCGCTCTTTCC 10968 28 100.0 46 ............................ CTGCGGGAAATGATGGAGACCTGGTAATGAGAAAGCAGATAAGCAA 11042 28 100.0 43 ............................ CTGCGGGTGATGAAAAATATGTCCTAATCCGTGCCAGCATTGC 11113 28 96.4 45 ...............G............ CTGCGGGGGATGGATTCCGTGGAGTGGCGGGGAGTGTCCTGTTGG 11186 28 100.0 43 ............................ CAGCAGGATACGAATACATTCAGCGAAACATTCGGGGCAATCA 11257 28 100.0 35 ............................ ATTAACCTGCTGGATATGAACGTTGAAGATCTGGT 11320 28 78.6 0 .................A.....TCACC | ========== ====== ====== ====== ============================ ============================================== ================== 7 28 94.4 43 GTCGTAACGGCCTGAACGGCCAGAGGGT # Left flank : ACAGTGCTTTTTCCGTTGTGCGCAACCGGGCGACATCACCGTTCATGCTGGGCCAGCTGGCAATGCGCCACCAGAAACGCAGCAGCGCTTTGATGGGCGGTGTGCGCCAGTTGCCGAGCTGTTCGGCATCACCCAGAAAAGCAGGGGTAGTAAAGCTGAGGGAATAGGTGGAGCGTTGCAGGGTTTGTTTGTACCAGGGGCTTTGGGGGGTAGTCGTATCGGCCACGCTGCGGAACCTCCGTAATCCTTCACTCGGCGGGGCATACAGCGCCACCGGAAGGGGATGACTGTAAACAGGCTTTGCACTGTTTTAGCCATCCAGCGTGAACATAACAAGTTGAATTTCAGGGGATTGTGATCGGGGAGAGTGTTTTAGTGATCTGGCGGTAGTGATGTGAGTGGCAGACGGTGAGGTTCACTGCGTTCACCATCACCCTACATCAGGTCAGCGGTAGGGTGACGGTGAGGCACGAACCGCACCGTTTATCGCAGTCTTGCAG # Right flank : CCCTATCTATTCCATATTGTCTAAAGAGCAGCGGCGCTGTGCGCCAGTCGCCATCTTATTCCACTAGAGCAGGCGCTGTCTGCCCGCTCTGTCTTTCCAGTGTCTCCACCATCCAGCGTGAACATAACAAGTTAAATTTCAGGGAGTTGTGATCGGGGAGGGTGTTTTAGTGATCTGGCGGTGGTGATGTGAGTGGCAGATGGTGAGGTTCACTGCGTTCACCATCACCCTACATCAGGTCAGCGGTAGGGTGACGGTGAGGCACGAACCGCACCGTTTATCGCAGTCTTGCAGGAGAAAACGGCCTAAACGGCCAGAGGGTCTGCGGGAGCTCATATTCAAAATATCAGCGGGAAAGTTTTCTGAAGTCGTAACGGCCTGAACGGCCAGAGGGTCTGCGGGAAAGACACCATTGTAACTATTGAACATCTTACTGATATGTCGTAACGGCCTGAACGGCCAGAGGGTCTGCGGGACTCAGACTACGCTCACACACGTAT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAACGGCCTGAACGGCCAGAGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 12106-11641 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPT01000091.1 Pokkaliibacter plantistimulans strain L1E11 contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 12105 35 100.0 35 ................................... GTATCGCGAGTGTTATACTGATAGCTGAATGAGCC 12035 35 100.0 33 ................................... AGTGTCCTGCTCCAGCGCTGTGAGGGTATCCCC 11967 35 97.1 36 ....T.............................. CTTCCGGTTCATCGTCACCGTAGTCAGGTTCGTCAT 11896 35 100.0 40 ................................... ACTACTGTGTCAGAGATACGTGTGTGAGCGTAGTCTGAGT 11821 35 100.0 38 ................................... ATATCAGTAAGATGTTCAATAGTTACAATGGTGTCTTT 11748 35 100.0 38 ................................... TTCAGAAAACTTTCCCGCTGATATTTTGAATATGAGCT 11675 35 85.7 0 .....................T........TTCT. | ========== ====== ====== ====== =================================== ======================================== ================== 7 35 97.5 37 CCCGCAGACCCTCTGGCCGTTCAGGCCGTTACGAC # Left flank : TCAGGCCGCCAGCCACGGTCAGGGGCTGGCGGTGGTGGATAAACTCTTTGTGCAGGAAGAATTGCAGAACGGCCGTCTGGAACAGATCGACCCGACCGAAGTGCAGCCGGGCGGCCACTATCAGCTGTGCTTTGCCAGCCACTGGAAAGGCACCCGCGAGCTGGACAGCCTGTACCGCTGGATGGTGGAGACACTGGAAAGACAGACCGGGCAACCTGCTCAGGAGAAACAGCACCGATAAGATGATTGCCTGTTTCGCCTTGGATGTGGTGTGATAGGCAGCGCGTGGATAAGCGCAAAATGCTCTTTAAAAACAAAGGTTGTCAGATTACCTTCTGCAACACTCCAACAAATCACCGTCAACCACTTGATTTCAAAAGAAATCTTGTCAAAAAAGCGGCGATTTTCGGGTGCTTTTCAGGGTCTGCCCTGTGGATAACCTGGGGCCGTCAAAAACCGACTCGCAATGCTTTGATTGTAAAAGAGAATTTTGGGGTGCT # Right flank : CTGCAAGACTGCGATAAACGGTGCGGTTCGTGCCTCACCGTCACCCTACCGCTGACCTGATGTAGGGTGATGGTGAACGCAGTGAACCTCACCATCTGCCACTCACATCACCACCGCCAGATCACTAAAACACCCTCCCCGATCACAACTCCCTGAAATTTAACTTGTTATGTTCACGCTGGATGGTGGAGACACTGGAAAGACAGAGCGGGCAGACAGCGCCTGCTCTAGTGGAATAAGATGGCGACTGGCGCACAGCGCCGCTGCTCTTTAGACAATATGGAATAGATAGGGGTGACTGGCTGTTCAGGCCGTTACGACACCAGATCTTCAACGTTCATATCCAGCAGGTTAATACCCTCTGGCCGTTCAGGCCGTTACGACTGATTGCCCCGAATGTTTCGCTGAATGTATTCGTATCCTGCTGACCCTCTGGCCGTTCAGGCCGTTACGACCCAACAGGACACTCCCCGCCACTCCACGGAATCCATCCCCCGCAG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAGACCCTCTGGCCGTTCAGGCCGTTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //